Author Topic: B.1.1.7 (UK) and B.1.351(SA) and P1(Manaos) and 22033 ...)  (Read 162 times)

gsgs

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B.1.1.7 (UK) and B.1.351(SA) and P1(Manaos) and 22033 ...)
« on: January 05, 2021, 12:52:36 am »
genbank : https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?VirusLineage_ss=Severe%20acute%20respiratory%20syndrome%20coronavirus%202,%20taxid:2697049&SeqType_s=Nucleotide
UK : https://www.cogconsortium.uk/data/
Germany : https://civnb.info/sequences/
Denmark : https://www.covid19genomics.dk/statistics   (Jan15)
Brazil : https://github.com/CADDE-CENTRE/Novel-SARS-CoV-2-P1-Lineage-in-Brazil


checking for the new strains B.1.351 and B.1.1.7 = VUI202012/01 = VOC2020

prevalence in UK :
2020/12/24 : http://magictour.free.fr/b117a.GIF
2020/12/31 : http://magictour.free.fr/s2ua5spa.GIF
2011/01/09 : http://magictour.free.fr/s2ukc-sp.GIF


2020/12/08 , genbank=5/44708 , UK=1203(1050)/131631
2020/12/15 , DE=0/747 , UK=1289/133960
2020/12/17 , DE=0/764 , UK=141600 new strain-names
2020/12/20 , UK=2100/146416
DE,genbank,UK,RKI , 3rdcov(F157L,614D),B.1.351(South Africa),B.1.1.7,all
2020/12/21 , 0,0,0,834 , 0,0,0,45416 , 03,01,3042,150173 , 02,01,0958,3757
2020/12/22 , 0,0,0,834 , 0,0,0,45416 , 03,01,3063,150399 , 00,00,0021,0226
2020/12/23 , 0,0,0,831 , 0,0,0,45416 , 03,01,3094,151499 , 00,00,0031,1100 ,RKI:0/1742
2020/12/24 , 0,0,0,831 , 0,0,0,45660 , 06,01,3478,153115 , 03,00,0384,1616
2020/12/25 , 0,0,0,831 , 0,0,?,45690 , 06,01,3786,154728 , 00,00,0308,1613
2020/12/26 , 0,0,0,831 , 0,0,?,45690 , 07,01,4171,156089 , 01,00,0385,1362
2020/12/27 , 0,0,0,831 , 0,0,?,45802 , 08,01,4599,157340 , 01,00,0428,1251
2020/12/28 , 0,0,0,831 , 0,0,0,46123 , 08,01,4637,157550 , 00,00,0038,0210
2020/12/29 , 0,0,0,831 , 0,0,0,46123 , 09,02,4722,157828 , 01,01,0085,0278
2020/12/30 , 0,0,0,915 , 0,0,?,47112 , 09,02,4745,158072 , 00,00,0023,0248
2020/12/31 , 0,0,0,914 , 0,0,2,47316 , 09,02,4745,158072 , 00,00,0000,0000
2021/01/01 , ?,0,?,916 , 0,0,3,47364 , 12,06,5478,160174 , 03,04,0733,2102
2021/01/02 , ?,0,?,916 , 0,0,?,47375 , 12,09,5579,160683 , 00,03,0101,0509
2021/01/03 , ?,0,?,916 , 0,0,?,47375 , 12,10,5598,160953 , 00,01,0019,0270
2021/01/04 , ?,0,?,916 , 0,0,?,47405 , 20,19,7145,164105 , 08,09,0547,3152
2021/01/05 , ?,0,?,916 , 0,0,?.47405 , 20,19,7145,164105 , 00,00,0000,0000
2021/01/06 , ?,0,?,916 , 0,0,?,47405 , 20,19,7145,164105 , 00,00,0000,0000
2021/01/07 , ?,0,?,916 , 0,0,?,47996 , 32,29,9425,170346 , 12,10,2280,6241
2021/01/08 , ?,0,?,916 , 0,0,?,48034 , 32,29,9425,170346 , 00,00,0000,0000
2021/01/09 , ?,0,?,916 , 0,?,?,48038 , 32,29,9425,170346 , 00,00,0000,0000
2021/01/10 , ?,0,?,916 , 0,?,?,48063 , 32,29,9425,170346 , 00,00,0000,0000
2021/01/11 , ?,0,?,916 , 0,0,12,48451 ,44,36,13620,179932 , 12,07,4195,9586
2021/01/12 , 0,0,3,960,48602,179932
2021/01/13 , 0,0,3,960,49010,179932,24(cadde,Brazil,B.1.1.28 )
2021/01/14,960,49124,179932,24
2021/01/15 , 0,1,5,1042 , 49807 . 179932 , 24
2021/01/16 , 1042,50006,179932,24
2021/01/17 , 1042,50008,179932,24
2021/01/18 , 1042,50326,179932,24
2021/01/19 , 0,1,8,1126 , 50886 , 179932 , 24
2021/01/20 , 1129,51594,179932,24
2021/01/21 , 1129 , 52058 , 179932 , 24
2021/01/22 , 1129 , 52636 , 179932 , 24
2021/01/23 , 1129 , 52969 . 179932 , 24
2021/01/24 , 1210 , 52969 , 179932 , 24
2021/01/25 , 1272 , 53630 , 179932 , 24
2021/01/26 , 1272 , 54758 , 179932 , 24

--------------------------------------
first B.1.1.7 at genbank : MW422255,MW422256,MW423686
San Diego, USA , Italy
Italy,12mut., no deletions !
https://www.ncbi.nlm.nih.gov/nuccore/MW422255

-------------------------------------------
https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?VirusLineage_ss=Severe%20acute%20respiratory%20syndrome%20coronavirus%202,%20taxid:2697049&SeqType_s=Nucleotide
https://www.cogconsortium.uk/data/
https://civnb.info/sequences/

---------------------------------------------------
weekly % of B.1.1.7 in Denmark week 46 - 02 : redoubles every 8 days
0.3,0.0,0.2,0.2,0.4,0.8,2.1,2.4,3.9,7.0

« Last Edit: January 26, 2021, 11:54:32 pm by gsgs »

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gsgs

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Re: B.1.1.7 and B.1.351 (and ...)
« Reply #1 on: January 06, 2021, 01:26:47 am »
400 Austria , 4*B117 , 1*B351
196 US-LA  Nov25-Dec18. 0*B117
Denmark ,86*B117
 India,76
Ireland, weeks 51,52,53 : 09%,13%,25%
Luxembourg: 2% (3/141) Dec20-Dec29
Belgium, Jan25, 25% are B117

2020-01-06,Cape Town The Western Cape government said its Garden Route district has passed
its Covid-19 peak and the rate of infections was significantly decreasing in the area.
----------------------------------------------
« Last Edit: January 25, 2021, 05:19:32 am by gsgs »

gsgs

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Re: B.1.1.7 and B.1.351 (and ...)
« Reply #2 on: January 08, 2021, 11:09:31 am »
Code: [Select]
D00614G,135340,143930,8590
A00222V, 56710, 60647,3937
N00501Y,  6060,  9928,3868
P00681H,  5659,  9517,3858
T00716I,  5624,  9471,3847
D01118H,  5576,  9422,3846
S00982A,  5568,  9413,3845
A00570D,  5569,  9413,3844
L00018F, 31126, 33762,2636
A00262S,  2873,  3053, 180
E00583D,  1929,  2091, 162
N00439K,  3669,  3794, 125
L00005F,  2270,  2394, 124
P00272L,  1896,  2008, 112
S00477N,  2928,  3034, 106
D00080Y,  1134,  1227,  93
Q00023H,   591,   660,  69
G00181V,   248,   317,  69
N00164T,   648,   708,  60
S00256L,   743,   800,  57
A00706V,   141,   196,  55
S00098F,   809,   859,  50
D00215H,   883,   930,  47
A01020S,   227,   269,  42
Q00613H,   210,   252,  42
S00494P,   101,   143,  42
L00176F,   886,   924,  38
D01163Y,  1730,  1766,  36
P01069S,   173,   209,  36
G01167V,  1704,  1738,  34
A00688V,   833,   863,  30
A00701V,    81,   111,  30
S00939F,   246,   274,  28
H00655Y,  1078,  1104,  26
Q00675H,   215,   240,  25
N00185S,   101,   126,  25
P00026S,   307,   331,  24
S00254F,   124,   147,  23
D00138Y,    76,    98,  22
H00049Y,    93,   114,  21
E00484K,    23,    44,  21
Q00677H,   198,   218,  20
D00080A,    24,    44,  20
P00681R,    21,    41,  20
A00831V,    18,    38,  20
K00417N,    13,    33,  20

-------------------------------

spike amino-acid mutations at cog-uk

A:mutation
B:occurrances Jan03
C:occurrances Jan07
D:occurrances between Jan03 and Jan07

« Last Edit: January 10, 2021, 07:39:45 am by gsgs »

gsgs

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Re: B.1.1.7 and B.1.351 (and ...)
« Reply #3 on: January 10, 2021, 07:37:44 am »
I see a new potential variant of concern in the #cog-uk data.
It has 18 sudden new mutations,
5 amino acid changes in spike. first Nov27,
CAMC-BD17BD , named just "A". (old, rare now)
3,11,27 of them on Dec22,Jan03,Jan08
@AineToole @arambaut
But many aa changes in spike which is rare
and potentially dangerous
F157L,V367F,Q613H,P681R, (L141F,R102I)


mutation table of the 27 viruses from Jan08:

Code: [Select]
po                                      00001221011221101122222212202212022
si                                      00124888438716781122233418848808015
ti                                      39361286968985772200646051153870997
on                                      32198787468967486303600924677747080
                                        75453818077475526003114714738879158

--Index---------------------------------CCCCCCGTCCAAGCCCGGCCGGCTGTGCGGCGAGC
  1 >Wuhan-Hu-1         ,2019-12-01,00  ...................................
  3 >England/MILK-CB1C77,2020-12-06,50  TTATTAA......TTTTTTATTGCTCATCAT....
  4 >England/MILK-CB1C86,2020-12-06,50  TTATTAA......TTTTTTATTGCTCATCAT....
  5 >England/MILK-CB1C68,2020-12-06,50  TTATTAA......TTTTTTATTGCTCATCAT....
  2 >England/MILK-C53AC8,2020-12-12,50  ......A......TTTTTTATTGCTCATCAT....
  6 >England/ALDP-C3D88E,2020-12-10,50  -...........TTTTTTTATTGCTCATCA-....
  7 >England/MILK-C91897,2020-12-12,50  ............TTTTTTTATTGCTCATCAT....
  8 >England/CAMC-C70D53,2020-12-16,51  ...........-TTTTTTTATTGCTCATCAT-...
  9 >England/ALDP-C8B57B,2020-12-16,51  ............TTTTTTTATTGCTCATCAT....
 10 >England/ALDP-CB55B4,2020-12-20,52  ........T...TTTTTTTATTGCTCATCAT....
 11 >England/LIVE-DCFF7C,2020-12-26,52  ........T..-TTTTTT-ATTGCTCATCAT-...
 21 >England/CAMC-BD17BD,2020-11-27,48  .............TTTTTTATTGCTCATCATTTTT
 20 >England/CAMC-C4380D,2020-12-10,50  ...........-.TTTTTTATTGCTCATCAT-TTT
 14 >England/CAMC-C470E3,2020-12-10,50  .............TTTTTTATTGCTCATCATTTTT
 22 >England/QEUH-C3151A,2020-12-11,50  .............TTTTTTATTGCTCATCATTTTT
 12 >England/QEUH-C53F05,2020-12-11,50  ...........--TTTTT-ATTGCTCATCAT-T-T
 23 >England/QEUH-C5C7B9,2020-12-14,51  .............TTTTTTATTGCTCATCATTTTT
 25 >England/ALDP-C8DE41,2020-12-15,51  .............TTTTTTATTGCTCATCATTTTT
 17 >England/QEUH-C93640,2020-12-16,51  .............TTTTTTATTGCTCATCATTTTT
 18 >England/ALDP-C8A0A8,2020-12-16,51  .............TTTTTTATTGCTCATCATTTTT
 19 >England/ALDP-C88D1C,2020-12-16,51  .............TTTTTTATTGCTCATCATTTTT
 24 >England/QEUH-C7F8BD,2020-12-16,51  .............T-TTTTATTGCTCATCATTTTT
 26 >England/ALDP-CBF602,2020-12-20,52  .............TTTTTTATTGCTCATCATTTTT
 29 >England/QEUH-CC37F9,2020-12-21,52  .............TTTTTTATTGCTCATCATTTTT
 13 >England/ALDP-C3A168,2020-12-08,50  .........TG..TTTTTTATTGCTCATCATTTTT
 28 >England/ALDP-C8B432,2020-12-16,51  .........TG-.TTTTTTATTGCTCATCAT-TTT
 27 >England/OXON-F43F7E,2020-12-18,51  .........TG..TTTTTTATTGCTCATCATTTTT
 16 >England/ALDP-C8CD72,2020-12-14,51  .......A...R.TTTTTTATTGCTCATCATTTTT
--Index---------------------------------CCCCCCGTCCAAGCCCGGCCGGCTGTGCGGCGAGC

po                                      00001221011221101122222212202212022
si                                      00124888438716781122233418848808015
ti                                      39361286968985772200646051153870997
on                                      32198787468967486303600924677747080
                                        75453818077475526003114714738879158



-------------update 2011-01-12-----------------------------------

Code: [Select]

 po                               000120202002201112022022202212122121012212202
 si                               020481803002708833411518502212133046878818849
 ti                               369123856975596860982090790026546705771123857
 on                               392871829677837861465687000336200497844667774
                                  755384198352998772075859810301114775254768832
---Index--------------------------CCCCCCGGTACCGATACGCGGAGGCACCGGGGCCTCCCTGGGGCG
   1 >Index:Wuhan                 .............................................
   2 >England/CAMC-C92720/2020    .....-......-...-..-----..--T-TTG-----CATCAT-
   3 >England/MILK-D0D65F/2020    ...........TT.........TTTTTATTTTGTCTTTCATCATA
   4 >England/CAMC-CF48FC/2020    ...........TT.........TTTTTATTTTGTCTTTCATCATA
   5 >England/PORT-2D5503/2020    --..........-....-....-TTTT-TTTTG--T-TCATCATA
   6 >England/ALDP-C88D1C/2020    ......................TTTTTATTTTGTCTTTCATCATA
   7 >England/QEUH-CC37F9/2020    ......................TTTTTATTTTGTCTTTCATCATA
   8 >England/QEUH-D12B76/2020    ......................TTTTTATTTTGTCTTTCATCATA
   9 >England/QEUH-C7F8BD/2020    .............G........TTTTTATTTTGTCTT-CATCATA
  10 >England/CAMC-D11403/2020    .............G........TTTTTATTTTGTCTTTCATCATA
  11 >England/OXON-F43F7E/2020    ...............GT.....TTTTTATTTTGTCTTTCATCATA
  12 >England/ALDP-C3A168/2020    ...............GT.....TTTTTATTTTGTCTTTCATCATA
  13 >England/MILK-D0C2D4/2020    ...............GT.....TTTTTATTTTGTCTTTCATCATA
  14 >England/ALDP-C8B432/2020    ...............GT.....T-TTTATTTTGTCTTTCATCATA
  15 >England/QEUH-C3151A/2020    ......................TTTTTATTTTGTCTTTCATCATA
  16 >England/ALDP-C8A0A8/2020    ......................TTTTTATTTTGTCTTTCATCATA
  17 >England/ALDP-C8DE41/2020    ......................TTTTTATTTTGTCTTTCATCATA
  18 >England/CAMC-BD17BD/2020    ......................TTTTTATTTTGTCTTTCATCATA
  19 >England/ALDP-CBF602/2020    ......................TTTTTATTTTGTCTTTCATCATA
  20 >England/QEUH-C93640/2020    ......................TTTTTATTTTGTCTTTCATCATA
  21 >England/CAMC-C470E3/2020    ......................TTTTTATTTTGTCTTTCATCATA
  22 >England/QEUH-C53F05/2020    ......................--TTTATTTTGTCTTTCATCATA
  23 >England/QEUH-C5C7B9/2020    ......................TTTTTATTTTGTCTTTCATCATA
  24 >England/CAMC-C4380D/2020    ......................T-TTTATTTTGTCTTTCATCATA
  25 >England/ALDP-C8CD72/2020    ..............A.......TTTTTATTTTGTCTTTCATCATA
  26 >England/ALDP-CE1BEA/2020    ..............A.......T-TTTATTTTGTCTTTCATCAT-
  27 >England/ALDP-C8B57B/2020    ...................T......TATTTTGTCTTTCATCATA
  28 >England/CAMC-C70D53/2020    ...................T...-..TATTTTGTCTTTCATCATA
  29 >England/ALDP-C3D88E/2020    -..................T......TATTTTG-CTTTCATCATA
  30 >England/MILK-C91897/2020    ...................T......TATTTTGTCTTTCATCATA
  31 >England/ALDP-CB55B4/2020    ..................TT......TATTTTGTCTTTCATCATA
  32 >England/ALDP-CEB4D6/2020    ..................TT......TATTTTGTCTTTCATCATA
  33 >England/ALDP-CECF7A/2020    ..................TT......TATTTTGTCTTTCATCATA
  34 >England/LIVE-DCFF7C/2020    .................ATT--.-..-ATTTTGTCTTTCATCAT-
  35 >England/LIVE-DD01BE/2020    .................AT-----..TATTTTGTCTTTCATCAT-
  36 >England/ALDP-D41394/2020    .................ATT......TATTTTGTCTTTCATCATA
  37 >England/LIVE-DCFB1E/2020    .................AT-----..TATTTTGT-TTTCATCAT-
  38 >England/LIVE-DCFC93/2020    ..............--.AT-----..--TTTTGTCTTT--TCAT-
  39 >England/CAMC-CF4B5D/2020    ......AAAG..........CG....TATTTTGTCTTTCATCATA
  40 >England/MILK-C53AC8/2020    ......AAAG..........CG....TATTTTGTCTTTCATCATA
  41 >England/CAMC-D0DACC/2020    ......AAAGT.........CG....TATTTTGTCTTTCATCATA
  42 >England/CAMC-D0DA9F/2020    ......AAAGT.........CG....TATTTTGTCTTTCATCATA
  43 >England/MILK-CB1C68/2020    TTTTAAA...................TATTTTGTCTTTCATCATA
  44 >England/MILK-CB1C77/2020    TTTTAAA...................TATTTTGTCTTTCATCATA
  45 >England/MILK-CB1C86/2020    TTTTAAA...................TATTTTGTCTTTCATCATA
 po                               000120202002201112022022202212122121012212202
 si                               020481803002708833411518502212133046878818849
 ti                               369123856975596860982090790026546705771123857
 on                               392871829677837861465687000336200497844667774
                                  755384198352998772075859810301114775254768832
,,,





full names :
Code: [Select]

>England/CAMC-BD17BD/2020,UK,UK-ENG,True,2020-11-27,48,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/MILK-CB1C77/2020,UK,UK-ENG,True,2020-12-06,50,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/MILK-CB1C86/2020,UK,UK-ENG,True,2020-12-06,50,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/MILK-CB1C68/2020,UK,UK-ENG,True,2020-12-06,50,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-C3A168/2020,UK,UK-ENG,True,2020-12-08,50,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/CAMC-C470E3/2020,UK,UK-ENG,True,2020-12-10,50,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-C3D88E/2020,UK,UK-ENG,True,2020-12-10,50,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/CAMC-C4380D/2020,UK,UK-ENG,True,2020-12-10,50,A,1.0,D,N,P,A,Y,N,T,R,X,ref
>England/CAMC-C92720/2020,UK,UK-ENG,True,2020-12-11,50,-,---,D,N,P,X,Y,N,T,R,X,X--
>England/QEUH-C3151A/2020,UK,UK-ENG,True,2020-12-11,50,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/QEUH-C53F05/2020,UK,UK-ENG,True,2020-12-11,50,A,1.0,D,N,P,A,Y,N,T,R,X,X--
>England/MILK-C91897/2020,UK,UK-ENG,True,2020-12-12,50,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/MILK-C53AC8/2020,UK,UK-ENG,True,2020-12-12,50,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-C8CD72/2020,UK,UK-ENG,True,2020-12-14,51,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/QEUH-C5C7B9/2020,UK,UK-ENG,True,2020-12-14,51,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-C8DE41/2020,UK,UK-ENG,True,2020-12-15,51,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/QEUH-C93640/2020,UK,UK-ENG,True,2020-12-16,51,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-C88D1C/2020,UK,UK-ENG,True,2020-12-16,51,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-C8B57B/2020,UK,UK-ENG,True,2020-12-16,51,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-C8A0A8/2020,UK,UK-ENG,True,2020-12-16,51,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/QEUH-C7F8BD/2020,UK,UK-ENG,True,2020-12-16,51,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-C8B432/2020,UK,UK-ENG,True,2020-12-16,51,A,1.0,D,N,P,A,Y,N,T,R,X,ref
>England/CAMC-C70D53/2020,UK,UK-ENG,True,2020-12-16,51,A,1.0,D,N,P,A,Y,N,T,R,X,ref
>England/CAMC-CF48FC/2020,UK,UK-ENG,True,2020-12-18,51,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/OXON-F43F7E/2020,UK,UK-ENG,Fals,2020-12-18,51,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/PORT-2D5503/2020,UK,UK-ENG,Fals,2020-12-20,52,-,---,D,X,P,X,X,X,T,R,Q,ref
>England/MILK-D0D65F/2020,UK,UK-ENG,True,2020-12-20,52,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/MILK-D0C2D4/2020,UK,UK-ENG,True,2020-12-20,52,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-CBF602/2020,UK,UK-ENG,True,2020-12-20,52,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-CB55B4/2020,UK,UK-ENG,True,2020-12-20,52,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-CEB4D6/2020,UK,UK-ENG,True,2020-12-21,52,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-CECF7A/2020,UK,UK-ENG,True,2020-12-21,52,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/CAMC-CF4B5D/2020,UK,UK-ENG,True,2020-12-21,52,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/QEUH-CC37F9/2020,UK,UK-ENG,True,2020-12-21,52,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/ALDP-CE1BEA/2020,UK,UK-ENG,True,2020-12-24,52,A,1.0,D,N,P,A,Y,N,T,R,X,ref
>England/LIVE-DD01BE/2020,UK,UK-ENG,Fals,2020-12-26,52,-,---,D,N,P,A,Y,N,T,R,X,X--
>England/CAMC-D0DACC/2020,UK,UK-ENG,True,2020-12-26,52,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/CAMC-D11403/2020,UK,UK-ENG,True,2020-12-26,52,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/CAMC-D0DA9F/2020,UK,UK-ENG,True,2020-12-26,52,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/QEUH-D12B76/2020,UK,UK-ENG,True,2020-12-26,52,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/LIVE-DCFF7C/2020,UK,UK-ENG,Fals,2020-12-26,52,A,1.0,D,N,P,A,Y,N,T,R,X,ref
>England/ALDP-D41394/2020,UK,UK-ENG,True,2020-12-27,53,A,1.0,D,N,P,A,Y,N,T,R,Q,ref
>England/LIVE-DCFB1E/2020,UK,UK-ENG,Fals,2020-12-28,53,-,---,D,N,P,A,Y,N,T,R,X,X--
>England/LIVE-DCFC93/2020,UK,UK-ENG,Fals,2020-12-28,53,-,---,D,N,P,A,Y,N,T,R,X,X--



and the mutation table for the South Africa varisnt , B.1.351 :

Code: [Select]

 po                                000100021020122011212022202220221200202202212222202200212020
 si                                080708793623491539171475803564869546796122105363808330542135
 ti                                083499031523926168194505265404305721136662839040218602548042
 on                                918234802204263020191454506205112800944190020651578634601503
                                   484792622550503003098096454989034426345426134362347471383930
---Index---------------------------GCCGAGCTGCGGCGTCCCCCTCCCAAGGTACCCGCTTCCCAAAACACGCGCCCCGCGCAG
   1 >Index:Wuhan 2019-12-01       ............................................................
   2 >England/LOND-D564E/2020      ....................................................TTTTTTG.
   3 >England/BIRM-6DB3D/2021      ......-.ATC.....--......C-..-..---...-..-..G--T-TTTTTTTTTTGT
   4 >England/PHEC-14F5D8/2020     ........ATC................................GTTTATTTTTTTTTTGT
   5 >England/QEUH-CAF17D/2020     ................................T........GCGT-TATTTTTTTTTTGT
   6 >England/OXON-F440A7/2020     ................................T.......TGCGTTTATTTTTTTTTTGT
   7 >England/PHEC-14F56F/2020     .............TCTY...............T.......TGCGTTTATTTTTTTTTTGT
   8 >England/PHEC-150A5D/2020     .............TCTY...............T.......TGCGTTTATTTTTTTTTTGT
   9 >England/PHEC-151290/2021     ..............................TT-......TTGCGT-T-TTTTTTTTTTGT
  10 >England/NORW-F24BA/2020      ..............................TT.......TTGCGT-TATTTTTTTTTTGT
  11 >England/PHEC-151281/2021     ..............................TT-......TTGCGTTTATTTTTTTTTTGT
  12 >England/PHEC-14E946/2020     .................................T.....TTGCGTTTATTTTTTTTTTGT
  13 >England/CAMC-D3481D/2020     --...............................T...-.TTGCGTTTAT-TTT-TTTTGT
  14 >England/PHEC-14F5AB/2020     TTTTGATC.........................-....TT-GCG---ATTTTTTTTTTGT
  15 >England/PHEC-14F59C/2020     TTTTGATC..-...........................TTT-CGTTTATTTTTTTTTTGT
  16 >England/PHEC-14F58D/2020     TTTTGATC..............................TTTGCGT-T-TTTTTTTTTTGT
  17 >England/PHEC-14F57E/2020     TTTTGATC..............................TTTGCGTTTATTTTTTTTTTGT
  18 >England/MILK-CAE2B7/2020     ......................................TTTGCGTTTATTTTTTTTTTGT
  19 >England/CAMC-D35DA4/2020     ......................................TTTGCGTTTATTTTTTTTTTGT
  20 >Scotland/EDB11343/2020       ......................................TTTGCGTTTATTTTTTTTTTGT
  21 >Scotland/EDB11342/2020       .............................G........TTTGCGTTTATTTTTTTTTTGT
  22 >England/MILK-CA9C09/2020     .........................GTTCG........TTTGCGTTTATTTTTTTTTTGT
  23 >England/MILK-CA9BB1/2020     .........................GTTCG........TTTGCGTTTATTTTTTTTTTGT
  24 >England/PHEC-14F5C9/2020     ...............-.....--.-G-TC--..-....TT-GCG-----T--TTT-TTG.
  25 >England/CAMC-C0FC5C/2020     .......--...--.........-.----..--T--..-TTG--T-T-TTT--T--T-GT
  26 >Wales/PHWC-4A8A17/2020       .......................................TTGCGTTTATTTTTTTTTTGT
  27 >England/PHEC-14F5BA/2020     .......................................TTGCGTTTATTTTTTTTTTGT
  28 >England/QEUH-CCC471/2020     .......................................TTGCGTTTATTTTTTTTTTGT
  29 >England/MILK-C90388/2020     .......................................TTGCGTTTATTTTTTTTTTGT
  30 >England/ALDP-C690DC/2020     .................TTTCTTTC................GCGT-T-TTTTTTTTTTGT
  31 >England/ALDP-C690AF/2020     .................TTTCTTTC................GCGTTTATTTTTTTTTTGT
  32 >England/LOND-126B596/2020    .................TTT..TTC.......-........GCGTTTATTTTTTTTTTGT
  33 >England/ALDP-CB4807/2020     ...................T....C................GCGTTTATTTTTTTTTTGT
  34 >England/ALDP-C8FEC7/2020     ...........TT.............................CGTTTATTTTTTTTTTGT
  35 >England/PHEC-15112A/2020     ....--....-TT...............-..-..-..-...--GT---TTTT-TTTTT-T
  36 >England/PHEC-14E964/2020     ..................................TCCT..TGCGTTTATTTTTTTTTTGT
  37 >England/ALDP-C497BF/2020     ..................................TCCT..TGCGTTTATTTTTTTTTTGT
  38 >England/PHEC-14E973/2020     ..................................TCCT..TGCGTTTATTTTTTTTTTGT
  39 >England/PHEC-14E937/2020     ..................................TCCT..TGCGTTTATTTTTTTTTTGT
  40 >England/ALDP-C8E7FA/2020     ...................................CCT..TGCGTTTATTTTTTTTTTGT
  41 >England/ALDP-CE20EA/2020     ...................................CCT..TGCGTTTATTTTTTTTTTGT
  42 >England/SHEF-10C720C/2020    ................-..................CCT..-GCGT-T-TTTTTTTTTTGT
  43 >England/PHEC-14E955/2020     .....................-.......-....-CCT..TGCGTTTATTTTTTTTTTGT
 po                                000100021020122011212022202220221200202202212222202200212020
 si                                080708793623491539171475803564869546796122105363808330542135
 ti                                083499031523926168194505265404305721136662839040218602548042
 on                                918234802204263020191454506205112800944190020651578634601503
                                   484792622550503003098096454989034426345426134362347471383930
,,,

« Last Edit: January 12, 2021, 03:51:35 am by gsgs »

gsgs

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Germany updates :

2020/10/18 ,  496 , http://magictour.free.fr/sars2de4.GIF
2020/10/28 ,  546 , http://magictour.free.fr/sars2de5.GIF
2020/11/01 ,  576 , http://magictour.free.fr/sars2de6.GIF
2020/11/04 ,  619 , http://magictour.free.fr/sars2de7.GIF
2020/11/24 ,  658 , http://magictour.free.fr/sars2de8.GIF
2020/12/08 ,  713 , http://magictour.free.fr/sars2dea.GIF
2020/12/15 ,  747 , http://magictour.free.fr/sars2deb.GIF
2020/12/21 ,  835 , http://magictour.free.fr/sars2ded.GIF
2020/12/30 ,  917 , http://magictour.free.fr/sars2dee.GIF
2021/01/13 ,  960 , http://magictour.free.fr/sars2def.GIF
2021/01/16 , 1042 , http://magictour.free.fr/sars2deg.GIF
2021/01/20 , 1126 , http://magictour.free.fr/sars2deh.GIF
2021/01/25 , 1210 , http://magictour.free.fr/sars2dei.GIF
2021/01/26 , 1272 , http://magictour.free.fr/sars2dej.GIF


Code: [Select]

=======Germany=============
00,0,0,0,013,0 , 505, 2010-10-18
00,0,0,0,030,0 , 572, 2020-11-01
00,0,0,0,076,0 , 710, 2020-12-07
00,0,0,0,084,0 , 745, 2020-12-15
00,0,0,0,092,0 , 764, 2020-12-18
00,0,0,0,117,0 , 835, 2020-12-21
00,0,0,0,137,0 , 915, 2020-12-30
03,0,0,0,145,1 , 992, 2021-01-13
05,1,0,0,188,2,71 ,1042, 2021-01-16
08,1,0,0,247,2,75 ,1127, 2021-01-20
14,4,0,0,288,2,79 ,1210, 2021-01-25
49,4,0,0,308,2,82 .1272, 2021-01-26

--------------------------------
A,B,C,D,  E,F, G ,  H

[code]

A , B.1.1.7,SE-England
B , B.1.351,South Africa
C , A-old,Uganda
D , B.1.1.28,Brazil-Manaos
E , B.1.177,Spain-Aragon
F , B.1.1.70,Wales
G , B.1.258
H , -,all,World
« Last Edit: January 26, 2021, 02:19:37 am by gsgs »

gsgs

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B.1.1.7 in Germany :

CSpecVir21528,2020-12-21,Baden-Wuerttemberg,unknown 
CSpecVir21648,2020-12-22,Bavaria,Erding 
CSpecVir21960,2020-12-23,Baden-Wuerttemberg,unknown 
CSpecVir21659,2020-12-23,Bavaria,Passau 
CSpecVir21652,2020-12-23,Bavaria,Passau 
CSpecVir21772,2020-12-24,Schleswig-Holstein,Halstenbek 
CSpecVir21719,2020-12-29,Baden-Wuerttemberg,unknown 
CSpecVir21988,2020-12-29,Baden-Wuerttemberg,unknown 
CSpecVir21668,2020-12-29,Lower Saxony,Vechta 
CSpecVir21961,2021-01-01,Bavaria,unknown 
CSpecVir22113,2021-01-05,North Rhine Westphalia,unknown 
CSpecVir22155,2021-01-11,Berlin,unknown 
CSpecVir22196,2021-01-11,Schleswig-Holstein,unknown 
CSpecVir22562,2021-01-12,Schleswig-Holstein,Flensburg 
CSpecVir22559,2021-01-12,Schleswig-Holstein,Flensburg 
CSpecVir22561,2021-01-12,Schleswig-Holstein,Flensburg 
CSpecVir22558,2021-01-12,Schleswig-Holstein,Flensburg 
CSpecVir22547,2021-01-12,Schleswig-Holstein,Flensburg 
CSpecVir22560,2021-01-12,Schleswig-Holstein,Flensburg 
CSpecVir22557,2021-01-12,Schleswig-Holstein,Flensburg 
CSpecVir22195,2021-01-12,Schleswig-Holstein,unknown 
CSpecVir22551,2021-01-13,Schleswig-Holstein,Dithmarschen 
CSpecVir22563,2021-01-13,Schleswig-Holstein,Flensburg 
CSpecVir22541,2021-01-13,Schleswig-Holstein,Flensburg 
CSpecVir22546,2021-01-13,Schleswig-Holstein,Flensburg 
CSpecVir22542,2021-01-13,Schleswig-Holstein,Flensburg 
CSpecVir22544,2021-01-13,Schleswig-Holstein,Flensburg 
CSpecVir22553,2021-01-13,Schleswig-Holstein,Flensburg 
CSpecVir22554,2021-01-13,Schleswig-Holstein,Flensburg 
CSpecVir22549,2021-01-13,Schleswig-Holstein,Handewitt 
CSpecVir22543,2021-01-13,Schleswig-Holstein,Schleswig 
CSpecVir22292,2021-01-14,Lower Saxony,unknown 
CSpecVir22567,2021-01-15,Schleswig-Holstein,Elmshorn 
CSpecVir22565,2021-01-15,Schleswig-Holstein,Flensburg 
CSpecVir22564,2021-01-15,Schleswig-Holstein,Flensburg 
CSpecVir22566,2021-01-15,Schleswig-Holstein,Flensburg 
CSpecVir22568,2021-01-15,Schleswig-Holstein,Schenefeld 
CSpecVir22573,2021-01-16,Schleswig-Holstein,Flensburg 
CSpecVir22574,2021-01-16,Schleswig-Holstein,Flensburg 
CSpecVir22570,2021-01-16,Schleswig-Holstein,Flensburg 
CSpecVir22571,2021-01-16,Schleswig-Holstein,Flensburg 
CSpecVir22581,2021-01-17,Schleswig-Holstein,Flensburg 
CSpecVir22579,2021-01-17,Schleswig-Holstein,Flensburg 
CSpecVir22576,2021-01-17,Schleswig-Holstein,Flensburg 
CSpecVir22578,2021-01-17,Schleswig-Holstein,Flensburg 
CSpecVir22580,2021-01-17,Schleswig-Holstein,Flensburg 
CSpecVir22582,2021-01-17,Schleswig-Holstein,Flensburg 
CSpecVir22584,2021-01-17,Schleswig-Holstein,Harrislee 
CSpecVir22575,2021-01-17,Schleswig-Holstein,Schleswig-Flensburg