nCoV_info

General Category => genetics => Topic started by: gsgs on February 06, 2020, 04:07:32 am

Title: RaTG13
Post by: gsgs on February 06, 2020, 04:07:32 am
"RaTG13" is the closest known virus in animals. It is from a bat sampled in
a cave in Yunnan in 2013

it was transferred from GISAID to public genbank on 2020/02/06


the Wuhan virus compared with the RaTG13 virus has
one 3bp insertion at position 3316
one 12bp insertion at position 23586
one 3bp insertion at position 26517
one 1 bp-insertion at position 27371
one 1 bp-insertion at position 29820
29875 common nucleotides


http://magictour.free.fr/wuhrat1.GIF

{do the same with the Pangolin sequence and with ZC45 ... }

http://magictour.free.fr/wuhrat6.GIF

the claimed recombination is not so clear, IMO

well, how is it with these coronaviruses ? all these hills
shouldn't be there ... are they all recombinations  ?


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 > TMRCA of the two sequences nCoV2019 and RaTG13 of 69.5 years ago –
 > roughly 1950 +/- 10 years or so.