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Messages - gsgs

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46
actual epidemic charts / daily 189 countries
« on: January 30, 2021, 06:54:05 am »
http://magictour.free.fr/e-0129.GIF , Spain-deaths , Germany Rt-trend in States
http://magictour.free.fr/e-0130.GIF , UK-regions
http://magictour.free.fr/e-0131.GIF ,  Germany Rt-trend in States   (assuming contant number of tests)
http://magictour.free.fr/e-0201.GIF
http://magictour.free.fr/e-0202.GIF , with B.1.1.7 in England's regions

http://magictour.free.fr/e-0204.GIF
http://magictour.free.fr/e-0205.GIF

http://magictour.free.fr/e-0207.GIF
http://magictour.free.fr/e-0208.GIF
http://magictour.free.fr/e-0209.GIF
http://magictour.free.fr/e-0210.GIF
http://magictour.free.fr/e-0211.GIF   , now 199 countries
http://magictour.free.fr/e-0212.GIF 
http://magictour.free.fr/e-0213.GIF 
http://magictour.free.fr/e-0214.GIF  , now with continents
http://magictour.free.fr/e-0215.GIF 
http://magictour.free.fr/e-0216.GIF  , USA-deaths corrected
http://magictour.free.fr/e-0217.GIF  ,  French speculation on fin du Baisse en Europe


47
nCoV - discussion / Re: covidcg.org's big file encoding Gisaid but hiding the names and not showing the NNNNN
« on: January 17, 2021, 05:49:41 am »
hi babar.
Thanks !
I could download and unzip that file.
https://storage.googleapis.com/ve-public/v1.5/data_package.json.gz
231MB , 341354 lines ,
https://storage.googleapis.com/ve-public/v1.6/data_package.json.gz
https://storage.googleapis.com/ve-public/v1.7/data_package.json.gz

.
396 with B.1.351

shall we use (part of) this forum to exchange sequencing info ?
or make another forum ?
shall I make you admin for re-organisation ?
shall we invite others ?


48
genetics / Re: B.1.1.7 (UK) and B.1.351(SA) and P1(Manaos) and 22033 ...)
« on: January 13, 2021, 10:03:51 pm »
Germany updates :

2020/10/18 ,  496 , http://magictour.free.fr/sars2de4.GIF
2020/10/28 ,  546 , http://magictour.free.fr/sars2de5.GIF
2020/11/01 ,  576 , http://magictour.free.fr/sars2de6.GIF
2020/11/04 ,  619 , http://magictour.free.fr/sars2de7.GIF
2020/11/24 ,  658 , http://magictour.free.fr/sars2de8.GIF
2020/12/08 ,  713 , http://magictour.free.fr/sars2dea.GIF
2020/12/15 ,  747 , http://magictour.free.fr/sars2deb.GIF
2020/12/21 ,  835 , http://magictour.free.fr/sars2ded.GIF
2020/12/30 ,  917 , http://magictour.free.fr/sars2dee.GIF
2021/01/13 ,  960 , http://magictour.free.fr/sars2def.GIF
2021/01/16 , 1042 , http://magictour.free.fr/sars2deg.GIF
2021/01/20 , 1126 , http://magictour.free.fr/sars2deh.GIF
2021/01/25 , 1210 , http://magictour.free.fr/sars2dei.GIF
2021/01/26 , 1272 , http://magictour.free.fr/sars2dej.GIF
2021/02/02 , 1356 , http://magictour.free.fr/sars2dek.GIF
2021/02/03 , 1397 , http://magictour.free.fr/sars2del.GIF

Code: [Select]

=============Germany===============
00,0,0,0,013,0, 4 , 0, 505,4,2010-10-18
00,0,0,0,030,0,12 , 2, 572,6,2020-11-01
00,0,0,0,076,0,32 ,11, 710,a,2020-12-07
00,0,0,0,084,0,35 ,11, 745,b,2020-12-15
00,0,0,0,092,0,37 ,15, 764,c,2020-12-18
00,0,0,0,117,0,57 ,16, 835,d,2020-12-21
00,0,0,0,137,0,62 ,16, 915,e,2020-12-30
03,0,0,0,145,1,65 ,22, 992,f,2021-01-13
05,1,0,0,188,2,71 ,26,1042,g,2021-01-16
08,1,0,0,247,2,75 ,29,1127,h,2021-01-20
14,4,0,0,288,2,79 ,38,1210,i,2021-01-25
49,4,0,0,308,2,82 ,39,1273,j,2021-01-25
59,5,0,0,352,2,97 ,46,1356,k,2021-02-01
66,5,0,0,372,2,101,50,1397,l,2021-02-03
--------------------------------------
 A,B,C,D,  E,F, G , H,   I,J,    K

A , B.1.1.7,SE-England
B , B.1.351,South Africa
C , A-old,Uganda
D , B.1.1.28,Brazil-Manaos
E , B.1.177,Spain-Aragon
F , B.1.1.70,Wales
G , B.1.258 , Ireland ?
H , B.1.221 , Belgium
I , -,all,World
J , filename
K , date



Code: [Select]

==================UK==================
    0,  0, 0,0,    0,  0,   0,  5, 42102,2020-10-18
   66,  0, 0,0,26660,230,2021,520,107132,2010-11-23
  963,  0, 0,0,43679,353,2697,647,131386,2020-12-07
09418,029,26,0,60484,560,3326,688,151280,2021-01-08
42130,132,94,0,74966,619,3818,779,201894,2021-02-03
---------------------------------------------------
    A,  B, C,D,    E,  F,   G,  H,     I,     J

A , B.1.1.7,SE-England
B , B.1.351,South Africa
C , A-old,Uganda
D , B.1.1.28,Brazil-Manaos
E , B.1.177,Spain-Aragon
F , B.1.1.70,Wales
G , B.1.258 , Ireland ?
H , B.1.221 , Belgium
I , -,all,World
J , date

49
actual epidemic charts / Ireland
« on: January 10, 2021, 06:43:14 am »
actual links to Ireland charts :

https://pbs.twimg.com/media/ErVn-DlUcAcIzEb?format=jpg&name=large
https://pbs.twimg.com/media/ErUDXfyXMAIheEo?format=png&name=small
https://pbs.twimg.com/media/ErUC5toXcAwlKOe?format=png&name=medium
https://pbs.twimg.com/media/ErT5if8W4AEhHMX?format=png&name=medium
https://pbs.twimg.com/media/EquvqkVXcAI7kaz?format=jpg&name=4096x4096

https://twitter.com/RiochtConor2/status/1348208381899759616/photo/1


50
actual epidemic charts / measures
« on: January 09, 2021, 09:43:05 pm »
(incomplete)  list of measures in Europe since October




------------------------------------------------
Oct05,
new restrictions in Paris for two weeks
bars in Paris and suburbs closed starting Oct06
Restaurants : strict health protocols.
events < 1000 no alcohol >22:00
Public student, wedding, festive gathering forbidden.
Dance halls, game rooms, gyms and swimming pools closed
fairs, shows, and parks banned.
sricter guidelines for nursing home visits
------------------------------------------------
Denmark measures since mid-Sept :
restaurants,cafes,pubs close at 22:00
and masks are required there.
no gatherings >50 ,
homeoffice when possible,
avoid bus,train at main traffic hours
cases are declining since Sep27
up again since Oct18
----------------------------------------------
Since 2020/09/21 in Austria
private Feiern, Freizeitgestaltung, Gastronomie Märkte Messen
all private groups, except funerals, except dwellings : <10 instead <50
events : <100
masks on markets, exhibitions,gastro even outdoors
closed since 01:00
cases were plateauing in Austria since Sep21, up again since Sep28

Vienna measures : https://coronavirus.wien.gv.at/site/...tliches-leben/
since Sep27 Vienna surprisingly does better than Rest-Austria
Austria, Oct19, <7 on private meetings indoors and 13 outdoors
including weddings,clubs,birthday,gym
------------------------------------------
Montreal on 2020/10/08 released a breakdown
most have occurred in restaurants, bars, gyms and hotels.
------------------------------------------
Germany on 2020/10/07 detailed list, where people are infected
https://www.rki.de/DE/Content/Infekt...ublicationFile
mostly in dwellings
restaurants,bus,train : very rare
------------Oct07--------------------------------
Brussels closes all bars,cafes,restaurants
--------------------------------------------------------
Cataluna-Canovelles,Granollers,Franqueses, Aug25-Sep24
meetings<10 public and private, religious,bars,restaurants <50%
indoors and outdoors
cultural,recr.,sports special rules, <50%
cases are plateauing since Jul20, half of Madrid, deaths 1/3 of Spain
(why did it stop going up in July ? there must be other reasons)
Jul17 , Barcelona+Lleida, nightlife , masks required
https://web.gencat.cat/en/activem/re...als/catalunya/
https://portaljuridic.gencat.cat/ca/...ts/pjur_CoV-2/
----------------edit 2020/10/12---------------------------------------------
Quebec. The "red zone" limited closure strategy (close bars, restos, gyms,
restrict private gatherings, masks indoors in high schools) has knocked
R down from 1.4 two weeks ago to 0.9 today.
many clusters in Montreal are work-related.
Tele-work can prevent it
-----------------edit Oct14------------------
Netherlands partial lockdown since Oct14: Masks in public , asked to stay home
gatherings <5, no alcohol eve; bars, restaurants, cafes only takeout.
NL, bars restaurants closed no alcohol >20:00 , <3 private guests per day,
buses trains only if really necessary. Mask-rules (so far they had none).
Oct01 : After months of debate, NL issues 'urgent advice' for masks in public spaces
cases peak on Oct29
----Nov04
Netherlands, public buildings closed no foreign travel
----Nov19,
theaters museums,cinemas,libraries may re-open
bars,pubs,restaurants,cafes stay closed
3 (instead of 2) private guests per day allowed
---------------------edit Oct15-------------------------------------------------------
Czech builds field-hospitals
---------------------------------------------
curfew from 9pm-6am in Paris,St.Etienne,Lille,Lyon,Toulouse,Rouen
Grenoble,Montpellier,Marseille effective from 00:00 Saturday. Oct17
France bans all private parties at public venues, including weddings,
https://www.themayor.eu/en/france-en...rgency-tonight
https://www.connexionfrance.com/Fren...tions-answered
Oct17 , 19M , curfew , 21-06
no restrictions on public transport
€135fine , 12000 police officers
Bars closed , restaurants until 21:00.
IdF,Rouen,Lille,St.Etienne,Lyon,Grenoble,Toulouse, Montpellier,Marseille
----edit 1102 --- seems to be working ! cases down
especially in those 15 cities, but also elsewhere
but software bug, 60000 more cases since Oct28
http://magictour.free.fr/frci58b.GIF
-------------------------------------------------------
Oct16 , Lebanon closes bars, night clubs
------------------------------------------
Ontario, Sep.26 , bars restaurants, alcohol
week before : gatherings, events
screening business
"we can still prevent a staggering second wave in our city.”
Oct.16, York-region in modified stage 2 next week
------------------------------------------
Oct 17 The UK's new three-tier lockdown strategy won't stop the spread
according to former head of the WHO Professor Anthony Costello.
cases plateauing since Oct24
------------------------------------
Oct 19, lockdown in Berchtesgaden, Bavaria

=========================================
in Czechia Schools, bars, restaurants are closed,
public gatherings <7. Masks indoors
Full lockdown in two weeks.
--------------------------------------------------------------
Oct19
in Belgium bars cafes and restaurants close for 4 weeks,
curfew from 0-5, no alcohol > 8 pm. masks recommended
schools also closed (I think)
cases (MA3m) peak on Oct27 , full lockdown on Nov02
-------------------------------------------------
no gathering in London and 7 other ciies. bars, pubs and restaurants closed > 10 pm
“circuit breaker” , shutdown in Wales Oct23 , NI closed schools
--------------------------------------------------
Spain Oct09 , Madrid and 9 others in emergency. only essential travel,
reducing hotel and restaurant capacity, curfew >11 pm, gatherings <7
Catalonia closed bars and restaurants. Oct15 for 15d
------------------------------------------------------
Ireland lockdown:Oct21, only essential businesses asked to stay home.
Ireland is moving to level 5 from midnight on Wednesday, 21 October
cases peaked Oct19, 2 days before the lockdown
-----------------------------------------------------
Austria, gatherings <7 indoors <13 outdoors, local lockdown.
-------------------------------------------------------
Italy masks local 9 pm curfews restaurants )
-----------------------------------------------------------
Germany curfews, border checks, gatherings, local lockdown.
--------------------------------------------------
Greece masks
------------------------------------
Sweden encouraged to work from home.
-----------------------------------------------
2020/10/21 Radio Prague Int. @RadioPragueFr
New health measures in #Czechia from 10/22:
closure of all "non-essential" shops except food stores, pharmacies
and drugstores
Czech health secretary expects peak around Nov11
------------------------------------------
France , 15 departments under curfew from Oct25
---------------------------------------
Quebec, Oct01,no guests at home,
cases are plateauing
----------------------------------------------------
Oct23
Slovakia and Slovenia announce partial lockdowns
------------------------------
spanish government officials fail to agree on curfew measures
as health minister says epidemic is "out of control"
------------------------------------
France , the 9 p.m. curfew will be expanded to affect 46M people
----------------------------------------------------
Ireland,since Oct21: level5,lockdown {cases are going down since Oct19}
"we already have the strongest measures in Europe, but"
shops closed
Meet indoors only with people from same household
outdoors only <5km except work,school
schools and Kitas stay open
work from home, if possible
Oct 15 , budget , government members tested
5-level-plan
https://www.msn.com/en-ie/news/coron...ic/ar-BB194dlK
Oct15, Donegal, Monaghan and Cavan goto Level 4
---------------------------------------------------
Wales, lockdown since Oct30
--------------------------------------------------------
Bulgaria Oct 21
Oct 27 no entertainment , restrictions for bars etc.
cases plateauing since Nov05
------------------------------------------------------
Croatia, Oct 26
close events, gatherings<50,30,15 ; no alcohol>00:00, masks
https://www.thedubrovniktimes.com/ne...across-croatia
cases plateauing since Oct29 ... up again since Nov18
------------------------------------------------------
Northern Ireland {cases stable since Oct07}
lockdown on Oct.16, schools closed since Oct19
-------------------------------------
Germany since Nov02 :
only members from 2 household and max 10 people may meet in public
recreational and sports events cancelled
Bars,restaurants,clubs,discos,pubs, non-essential services closed. Take-away services allowed
Canteens stay open.
Financial support of $12B for companies that are affected
No Tourists
Asked to avoid private traveling
schools and shops stay open, only 1 customer per 10 squaremeters
Asked to work from home if possible
Churches stay open, but some measures are required
no curfew afaics
Bavaria orders contact reduction also for private rooms
(how to control ?)
Nov26:extended until Dec20 , plus private meetings<6,<3households
---------------------------------------------------
Oct29 , Macron announces nationwide lockdown, schools and work will continue
stay at home, except school, work, essential travel
Travel between regions prohibited
until 5000 cases/d
-------------------------------------------------
Oct31 ,
Belgium lockdown:
- All non-essential stores and some other businesses will close
- Bars and restaurants remain closed
- Working from home is mandatory, where possible
- People are still allowed to leave their home, but no visitors at home
- Measures will last at least 6 weeks
peak at Oct26, 5 daysl before the lockdown
----------------------------
Nov01 , UK nationwide lockdown
--------------------------------------
Oct29
measures in Switzerland
<11 friends+family
<50 events
<16 gatherings,sports
distance learning mandatory at > highschool
bars+ : <5 per table , sit for eat/drink
keep records , closed at 2300
nightclubs closed
masks in school , working indoors, bars+,shops,busy zones
Cantonal measures
no curfew, no travel restrictions, increased testing
cases down since ca. Nov05
-----------------------------------------
Oct15
Austria has ordered a full, three-week lockdown
shops (except food,drugs) and schools closed,
leave the home only for a good reason
---------------------------------------------
Nov11 , Sweden imposes partial lockdown on bars and restaurants ...
Nov20 , no alcohole in pubs after 22PM, closure 1/2hour earlier
------------------------------
Nov19 , Catalonia plans to open bars and restaurants at 30%
until five in the afternoon from Monday
The Government wants to carry out a de-escalation in four phases
that will have, at least, a duration of 15 days each
----------------------------------------------
Nov30 , Turkey announces weekend lockdown and 9 p.m. curfew on weekdays
Dec08,Bavaria, curfew in Hotspots , pupils change-lessons
Dec07 , Austria , reductions
Dec07 , Denmark is planning a partial lockdown in cities
Dec08 , Geneve opens restaurans
Dec08 , , Sachsen (SN) closes schools, most commerce
Dec08 , Bavaria in some days curfew21h , Thuringia maybe
Dec16 , hard lockdown in Germany and Netherlands
Dec15 , Italy increases measures (chart is down, looks good)
Dec17 , Germany-Saxony curfew in hotspots planned
Dec17, Denmark orders lockdown
Dec27,Czech lockdown #3


51
genetics / Re: spike-mutations
« on: January 09, 2021, 09:46:50 am »
mutation table of the 27   C22033T viruses :

Code: [Select]

po                                      00001221011221101122222212202212022
si                                      00124888438716781122233418848808015
ti                                      39361286968985772200646051153870997
on                                      32198787468967486303600924677747080
                                        75453818077475526003114714738879158
--Index--------------------------------------------------------------------
  1 >Wuhan-Hu-1         ,2019-12-01,00  ...................................
  3 >England/MILK-CB1C77,2020-12-06,50  TTATTAA......TTTTTTATTGCTCATCAT....
  4 >England/MILK-CB1C86,2020-12-06,50  TTATTAA......TTTTTTATTGCTCATCAT....
  5 >England/MILK-CB1C68,2020-12-06,50  TTATTAA......TTTTTTATTGCTCATCAT....
  2 >England/MILK-C53AC8,2020-12-12,50  ......A......TTTTTTATTGCTCATCAT....
  6 >England/ALDP-C3D88E,2020-12-10,50  -...........TTTTTTTATTGCTCATCA-....
  7 >England/MILK-C91897,2020-12-12,50  ............TTTTTTTATTGCTCATCAT....
  8 >England/CAMC-C70D53,2020-12-16,51  ...........-TTTTTTTATTGCTCATCAT-...
  9 >England/ALDP-C8B57B,2020-12-16,51  ............TTTTTTTATTGCTCATCAT....
 10 >England/ALDP-CB55B4,2020-12-20,52  ........T...TTTTTTTATTGCTCATCAT....
 11 >England/LIVE-DCFF7C,2020-12-26,52  ........T..-TTTTTT-ATTGCTCATCAT-...
 21 >England/CAMC-BD17BD,2020-11-27,48  .............TTTTTTATTGCTCATCATTTTT
 20 >England/CAMC-C4380D,2020-12-10,50  ...........-.TTTTTTATTGCTCATCAT-TTT
 14 >England/CAMC-C470E3,2020-12-10,50  .............TTTTTTATTGCTCATCATTTTT
 22 >England/QEUH-C3151A,2020-12-11,50  .............TTTTTTATTGCTCATCATTTTT
 12 >England/QEUH-C53F05,2020-12-11,50  ...........--TTTTT-ATTGCTCATCAT-T-T
 23 >England/QEUH-C5C7B9,2020-12-14,51  .............TTTTTTATTGCTCATCATTTTT
 25 >England/ALDP-C8DE41,2020-12-15,51  .............TTTTTTATTGCTCATCATTTTT
 17 >England/QEUH-C93640,2020-12-16,51  .............TTTTTTATTGCTCATCATTTTT
 18 >England/ALDP-C8A0A8,2020-12-16,51  .............TTTTTTATTGCTCATCATTTTT
 19 >England/ALDP-C88D1C,2020-12-16,51  .............TTTTTTATTGCTCATCATTTTT
 24 >England/QEUH-C7F8BD,2020-12-16,51  .............T-TTTTATTGCTCATCATTTTT
 26 >England/ALDP-CBF602,2020-12-20,52  .............TTTTTTATTGCTCATCATTTTT
 29 >England/QEUH-CC37F9,2020-12-21,52  .............TTTTTTATTGCTCATCATTTTT
 13 >England/ALDP-C3A168,2020-12-08,50  .........TG..TTTTTTATTGCTCATCATTTTT
 28 >England/ALDP-C8B432,2020-12-16,51  .........TG-.TTTTTTATTGCTCATCAT-TTT
 27 >England/OXON-F43F7E,2020-12-18,51  .........TG..TTTTTTATTGCTCATCATTTTT
 15 >England/ALDP-C8CD72,2020-12-14,51  .......A...R.TTTTTTATTGCTCATCATTTTT
 16 >England/ALDP-C8CD72,2020-12-14,51  .......A...R.TTTTTTATTGCTCATCATTTTT
po                                      00001221011221101122222212202212022
si                                      00124888438716781122233418848808015
ti                                      39361286968985772200646051153870997
on                                      32198787468967486303600924677747080
                                        75453818077475526003114714738879158

52
genetics / Re: spike-mutations
« on: January 09, 2021, 12:39:11 am »

>4 spike mutations surveilance picture

Jan03 :

Jan08 : http://magictour.free.fr/s2ukc-sp.GIF


growing mutations : A701V , Q23H , L18F , F157L (selected list)
growing strains : B.1.1.7 , B.1.351 , B.1.177.7 , B.1.177.6

and one ancient strain "A" appeared without D614G ,
mutations : F157L , V367F , Q613H , P681R  R102I , (L141F)
22 sequences from mid-Dec


 



Jan03 :
s2ukb1.GIF , aa-mutation-picture of 2443 randomly selected spike proteins
s2ukb-s4.GIF , 676 spike aa
s2ukb-s5.GIF
s2ukb-s5b.GIF big , with strain+mutation time-charts

Jan08 :
s2ukc-sp.GIF  , mutation picture of 2912 spike aa sequences
no time-charts of mutations and strains yet


53
genetics / Re: spike-mutations
« on: January 08, 2021, 11:11:49 am »
Code: [Select]
D00614G,135340,143930,8590
A00222V, 56710, 60647,3937
N00501Y,  6060,  9928,3868
P00681H,  5659,  9517,3858
T00716I,  5624,  9471,3847
D01118H,  5576,  9422,3846
S00982A,  5568,  9413,3845
A00570D,  5569,  9413,3844
L00018F, 31126, 33762,2636
A00262S,  2873,  3053, 180
E00583D,  1929,  2091, 162
N00439K,  3669,  3794, 125
L00005F,  2270,  2394, 124
P00272L,  1896,  2008, 112
S00477N,  2928,  3034, 106
D00080Y,  1134,  1227,  93
Q00023H,   591,   660,  69
G00181V,   248,   317,  69
N00164T,   648,   708,  60
S00256L,   743,   800,  57
A00706V,   141,   196,  55
S00098F,   809,   859,  50
D00215H,   883,   930,  47
A01020S,   227,   269,  42
Q00613H,   210,   252,  42
S00494P,   101,   143,  42
L00176F,   886,   924,  38
D01163Y,  1730,  1766,  36
P01069S,   173,   209,  36
G01167V,  1704,  1738,  34
A00688V,   833,   863,  30
A00701V,    81,   111,  30
S00939F,   246,   274,  28
H00655Y,  1078,  1104,  26
Q00675H,   215,   240,  25
N00185S,   101,   126,  25
P00026S,   307,   331,  24
S00254F,   124,   147,  23
D00138Y,    76,    98,  22
H00049Y,    93,   114,  21
E00484K,    23,    44,  21
Q00677H,   198,   218,  20
D00080A,    24,    44,  20
P00681R,    21,    41,  20
A00831V,    18,    38,  20
K00417N,    13,    33,  20

-------------------------------

spike amino-acid mutations at cog-uk

A:mutation
B:occurrances Jan03
C:occurrances Jan07
D:occurrances between Jan03 and Jan07



Code: [Select]
B.1.351        9,   29,  20
B.1.1.7     5579, 9432,3853


B.1.177    42296,46609,4313
B.1.1.7     5579, 9432,3853
B.1.177.7   2313, 2768, 455
B.1.177.4   3488, 3795, 307
B.1         5562, 5833, 271
B.1.1.37    4374, 4590, 216
B.1.177.15  1226, 1422, 196
B.1.1.315   4081, 4257, 176
B.39         183,  343, 160
B.1.1      11496,11650, 154
B.1.177.16   898, 1032, 134
B.1.160     1924, 2048, 124
B.1.1.311   2469, 2584, 115
B.1.36.17   1915, 2010,  95
B.1.36       652,  744,  92
B.1.177.6    604,  695,  91
B.1.177.9    647,  732,  85
B.1.160.7    596,  681,  85
B.1.177.18   459,  544,  85
B.1.1.1     5470, 5553,  83
B.1.1.307   2015, 2098,  83
B.1.177.5    479,  545,  66
B.1.1.301    700,  763,  63
B.1.1.71      23,   86,  63
B.1.258.7    418,  477,  59
B.1.177.10   348,  405,  57
B.1.160.1     96,  152,  56
B.1.1.70     666,  721,  55
B.1.258.11     2,   57,  55
B.1.1.279   1041, 1095,  54
B.1.177.20   453,  507,  54
B.1.1.300     36,   90,  54
B.1.177.17   827,  878,  51
B.1.221      667,  712,  45
B.1.177.22    76,  120,  44
B.1.258.10    41,   85,  44
B.1.160.6    129,  169,  40
B.1.36.6      99,  136,  37
B.1.1.125     60,   96,  36
B.1.177.8    870,  903,  33
B.1.247      118,  151,  33
B.1.258     1787, 1819,  32
B.1.258.3    406,  437,  31
B.1.222      170,  200,  30
B.1.1.130     78,  108,  30
B.1.177.19   445,  474,  29
B.1.1.10     469,  497,  28
B.1.1.49      33,   61,  28
B.1.1.238      0,   28,  28
B.1.254       26,   52,  26
A             66,   91,  25
B.1.177.2    182,  204,  22
B.1.1.286    323,  344,  21
B.1.1.196    153,  173,  20
B.1.104       96,  116,  20
B.1.351        9,   29,  20
B.1.1.240    176,  194,  18
B.1.177.26   129,  147,  18
B.1.246       21,   39,  18
B.1.1.282     11,   29,  18
B.1.1.5        6,   24,  18
B.1.1.101      0,   16,  16
B.1.235      859,  874,  15
B.1.1.105      4,   19,  15
B.1.1.236     90,  104,  14
B.1.177.11   564,  577,  13
B.1.141       59,   72,  13
B.26          29,   42,  13
B.1.1.197      7,   20,  13
B.1.1.303    350,  362,  12
B.48         147,  159,  12
B.1.258.4    205,  216,  11
B.1.36.9     203,  214,  11
B.1.1.204     68,   79,  11
B.54          65,   76,  11
B.52          59,   70,  11
B.47           5,   16,  11
B.1.362      204,  214,  10
B.1.1.234     47,   57,  10
B.32          25,   35,  10
B.1.36.1      25,   35,  10
B.1.1.316      8,   18,  10
B.3          508,  517,   9
B.18          11,   20,   9
B.1.1.304    139,  147,   8
B.1.1.264    136,  144,   8
B.1.131       28,   36,   8
B.1.1.190     10,   18,   8
B.1.1.285      0,    8,   8
B.1.258.12   101,  108,   7
B.1.1.43      49,   56,   7
B.1.1.292     46,   53,   7
B.1.1.46      10,   17,   7
B.1.5.34       6,   13,   7
B.1.111        3,   10,   7
B.1.1.198    418,  424,   6
B.1.1.44     340,  346,   6
B.1.160.2    121,  127,   6
B.1.1.232     88,   94,   6
B.1.1.170     65,   71,   6
B.1.353        1,    7,   6
B.1.1.4      473,  478,   5
B.1.98       461,  466,   5
B.1.367      268,  273,   5
B.1.1.217    251,  256,   5
B.1.177.13   106,  111,   5
B.1.1.12      77,   82,   5
B.1.1.50      53,   58,   5
B.1.240       49,   54,   5
B.1.1.159     42,   47,   5
B.1.1.153     30,   35,   5
B.1.248       28,   33,   5
B.1.2         25,   30,   5
B.1.1.248     25,   30,   5
B.1.1.106      9,   14,   5
B.1.1.103      5,   10,   5
B.1.35       217,  221,   4
B.1.160.4    179,  183,   4
B.1.146      159,  163,   4
B.10         118,  122,   4
B.1.1.189     76,   80,   4
B.1.1.274     69,   73,   4
B.1.201       64,   68,   4
B.1.36.16     62,   66,   4
B.1.258.6     46,   50,   4
B.1.229       29,   33,   4
B.1.1.20      11,   15,   4
B.1.36.3       0,    4,   4
B.1.1.126      0,    4,   4
B.1.1.255    294,  297,   3
B.1.1.3      103,  106,   3
B.1.236       74,   77,   3
B.1.1.39      65,   68,   3
B.1.1.54      24,   27,   3
B.1.11        19,   22,   3
B.1.5.33      18,   21,   3
B.1.1.114      3,    6,   3
C.14           1,    4,   3
B.1.102        0,    3,   3
B.1.1.62       0,    3,   3
B.1.1.239      0,    3,   3
B.1.1.89     146,  148,   2
B.31         132,  134,   2
B.1.36.12    100,  102,   2
B.1.1.294     96,   98,   2
B.1.1.299     73,   75,   2
B.1.1.15      69,   71,   2
B.1.3         26,   28,   2
B.1.1.86      26,   28,   2
B.1.1.288     23,   25,   2
B.1.1.163     22,   24,   2
B.1.77        21,   23,   2
B.1.275       20,   22,   2
B.1.1.133     17,   19,   2
B.1.1.131     16,   18,   2
B.6           11,   13,   2
B.1.1.162      4,    6,   2
B.1.1.182      3,    5,   2
B.1.213        2,    4,   2
B.1.334        0,    2,   2
B.1.260        0,    2,   2

B.1.5       2890, 2678,-212
B.40        2168, 1987,-181
B.1.1.291    145,    1,-144
B.1.255      162,   50,-112
B           1743, 1678, -65
B.1.1.206     45,    1, -44
B.1.1.257    218,  179, -39
B.1.223      231,  198, -33
B.1.1.25      41,   15, -26
B.1.1.207     33,    9, -24
B.1.1.47      29,    9, -20
B.1.1.151    256,  238, -18
B.1.88       138,  121, -17
B.1.1.195     59,   42, -17
B.1.1.253    371,  355, -16
B.23         112,   98, -14
B.1.1.53      15,    1, -14
B.1.1.216     52,   40, -12
B.1.1.273     27,   15, -12
B.1.177.14    14,    2, -12
B.1.1.152     13,    1, -12
A.1           31,   20, -11
B.1.1.64     129,  119, -10
B.1.178       18,    8, -10
B.1.182       10,    1,  -9
B.1.1.31      11,    2,  -9
B.1.1.80      18,   10,  -8
B.1.1.237    352,  345,  -7
H.1           14,    7,  -7
B.1.1.104     31,   25,  -6
B.1.1.164    161,  156,  -5
B.1.1.245    299,  295,  -4
B.1.215       95,   91,  -4
B.1.75        90,   86,  -4
B.1.1.165     69,   65,  -4
B.1.1.127     33,   29,  -4
B.1.1.243     26,   22,  -4
B.1.3.1       20,   16,  -4
B.1.1.161      9,    5,  -4
B.29         159,  156,  -3
B.1.1.29     140,  137,  -3
B.1.258.5    105,  102,  -3
B.1.1.193     65,   62,  -3
B.1.173       29,   26,  -3
B.1.5.12      22,   19,  -3
B.1.186        7,    4,  -3
B.1.212        5,    2,  -3
B.3.1        555,  553,  -2
B.1.1.38     223,  221,  -2
B.1.252      133,  131,  -2
B.34          73,   71,  -2
B.1.1.95      30,   28,  -2
B.4           26,   24,  -2
B.1.1.261     13,   11,  -2
B.1.36.13     10,    8,  -2
B.1.277        9,    7,  -2
B.1.358        4,    2,  -2
B.1.1.297      4,    2,  -2
B.1.1.296    232,  231,  -1
B.1.1.59     156,  155,  -1
B.1.1.250     88,   87,  -1
B.1.1.313     71,   70,  -1
B.1.1.123     63,   62,  -1
B.1.81        33,   32,  -1
B.1.1.166     23,   22,  -1
B.1.1.260     20,   19,  -1
B.1.1.187     20,   19,  -1
B.1.1.266     17,   16,  -1
B.1.108       16,   15,  -1
B.1.177.21    12,   11,  -1
B.1.1.281      6,    5,  -1
B.1.177.25     4,    3,  -1
B.1.1.211      4,    3,  -1
C.13           3,    2,  -1
B.1.190        3,    2,  -1
B.1.324        2,    1,  -1
B.1.1.99       2,    1,  -1
B.1.1.84       2,    1,  -1
B.1.1.135      2,    1,  -1


strain
occurrance Jan03
occurrance Jan07
occurrance between Jan03 and Jan07
(report date ... ahh, this is useless since we have the sampling dates]

54
genetics / Re: B.1.1.7 and B.1.351 (and ...)
« on: January 08, 2021, 11:09:31 am »
Code: [Select]
D00614G,135340,143930,8590
A00222V, 56710, 60647,3937
N00501Y,  6060,  9928,3868
P00681H,  5659,  9517,3858
T00716I,  5624,  9471,3847
D01118H,  5576,  9422,3846
S00982A,  5568,  9413,3845
A00570D,  5569,  9413,3844
L00018F, 31126, 33762,2636
A00262S,  2873,  3053, 180
E00583D,  1929,  2091, 162
N00439K,  3669,  3794, 125
L00005F,  2270,  2394, 124
P00272L,  1896,  2008, 112
S00477N,  2928,  3034, 106
D00080Y,  1134,  1227,  93
Q00023H,   591,   660,  69
G00181V,   248,   317,  69
N00164T,   648,   708,  60
S00256L,   743,   800,  57
A00706V,   141,   196,  55
S00098F,   809,   859,  50
D00215H,   883,   930,  47
A01020S,   227,   269,  42
Q00613H,   210,   252,  42
S00494P,   101,   143,  42
L00176F,   886,   924,  38
D01163Y,  1730,  1766,  36
P01069S,   173,   209,  36
G01167V,  1704,  1738,  34
A00688V,   833,   863,  30
A00701V,    81,   111,  30
S00939F,   246,   274,  28
H00655Y,  1078,  1104,  26
Q00675H,   215,   240,  25
N00185S,   101,   126,  25
P00026S,   307,   331,  24
S00254F,   124,   147,  23
D00138Y,    76,    98,  22
H00049Y,    93,   114,  21
E00484K,    23,    44,  21
Q00677H,   198,   218,  20
D00080A,    24,    44,  20
P00681R,    21,    41,  20
A00831V,    18,    38,  20
K00417N,    13,    33,  20

-------------------------------

spike amino-acid mutations at cog-uk

A:mutation
B:occurrances Jan03
C:occurrances Jan07
D:occurrances between Jan03 and Jan07

55
genetics / Re: B.1.1.7 and B.1.351 (and ...)
« on: January 06, 2021, 01:26:47 am »
400 Austria , 4*B117 , 1*B351
196 US-LA  Nov25-Dec18. 0*B117
Denmark ,86*B117
 India,76
Ireland, weeks 51,52,53 : 09%,13%,25%
Luxembourg: 2% (3/141) Dec20-Dec29
Belgium, Jan25, 25% are B117

2020-01-06,Cape Town – The Western Cape government said its Garden Route district has passed
its Covid-19 peak and the rate of infections was significantly decreasing in the area.
----------------------------------------------

56
genetics / B.1.1.7 (UK) and B.1.351(SA) and P1(Brazil) and B.1.617(India) and BA (South Africa) and BA.2 (Denmark) ...
« on: January 05, 2021, 12:52:36 am »
http://sonorouschocolate.com/covid19/index.php/UK_variant_comparison

https://filogeneti.ca/CoVizu/


variant charts by country :
https://covariants.org/per-country

BA.2 in UK : http://sonorouschocolate.com/covid19/index.php?title=Omicron_BA.2_vs_BA.1

genbank :  https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=SARS-CoV-2,%20taxid:2697049
https://www.ncbi.nlm.nih.gov/datasets/coronavirus/genomes/
https://www.ncbi.nlm.nih.gov/sars-cov-2/
https://www.ncbi.nlm.nih.gov/sars-cov-2/download-nuccore-ids/

UK-cog : https://www.cogconsortium.uk/tools-analysis/public-data-analysis-2/
Germany : https://civnb.info/sequences/
https://github.com/robert-koch-institut/SARS-CoV-2-Sequenzdaten_aus_Deutschland
https://zenodo.org/record/5800442/files/robert-koch-institut/SARS-CoV-2-Sequenzdaten_aus_Deutschland-2021-12-23.zip?download=1
Denmark : https://www.covid19genomics.dk/statistics   (Jan15)

Brazil : https://github.com/CADDE-CENTRE/Novel-SARS-CoV-2-P1-Lineage-in-Brazil
sequences no longer available (? they claim it's there, but I couldn't find it - edit: found ir here:),
https://github.com/CADDE-CENTRE/Novel-SARS-CoV-2-P1-Lineage-in-Brazil/blob/main/virological_post/CADDE_B.1.1.28_P1.fas
here is a nice overview:
https://cov-lineages.org/global_report_P.1.html
https://cov-lineages.org/global_report_B.1.351.html
https://cov-lineages.org/global_report_B.1.1.7.html
https://cov-lineages.org/global_report_B.1.525.html
https://cov-lineages.org/global_report_B.1.617.2.html   {old, not updated}


2021/03/02 : wikipedia has a good table : https://en.wikipedia.org/wiki/Lineage_B.1.1.7





RKI : https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/Virologische_Basisdaten.html


genbank old : https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?VirusLineage_ss=Severe%20acute%20respiratory%20syndrome%20coronavirus%202,%20taxid:2697049&SeqType_s=Nucleotide
UK , old  : https://www.cogconsortium.uk/data/  {no longer available 2021/02/26)


checking for the new strains B.1.351 and B.1.1.7 = VUI202012/01 = VOC2020

prevalence in UK :
2020/12/24 : http://magictour.free.fr/b117a.GIF
2020/12/31 : http://magictour.free.fr/s2ua5spa.GIF
2011/01/09 : http://magictour.free.fr/s2ukc-sp.GIF


2020/12/08 , genbank=5/44708 , UK=1203(1050)/131631
2020/12/15 , DE=0/747 , UK=1289/133960
2020/12/17 , DE=0/764 , UK=141600 new strain-names
2020/12/20 , UK=2100/146416
DE,genbank,UK,RKI , 3rdcov(F157L,614D),B.1.351(South Africa),B.1.1.7,all
2020/12/21 , 0,0,0,834 , 0,0,0,45416 , 03,01,3042,150173 , 02,01,0958,3757
2020/12/22 , 0,0,0,834 , 0,0,0,45416 , 03,01,3063,150399 , 00,00,0021,0226
2020/12/23 , 0,0,0,831 , 0,0,0,45416 , 03,01,3094,151499 , 00,00,0031,1100 ,RKI:0/1742
2020/12/24 , 0,0,0,831 , 0,0,0,45660 , 06,01,3478,153115 , 03,00,0384,1616
2020/12/25 , 0,0,0,831 , 0,0,?,45690 , 06,01,3786,154728 , 00,00,0308,1613
2020/12/26 , 0,0,0,831 , 0,0,?,45690 , 07,01,4171,156089 , 01,00,0385,1362
2020/12/27 , 0,0,0,831 , 0,0,?,45802 , 08,01,4599,157340 , 01,00,0428,1251
2020/12/28 , 0,0,0,831 , 0,0,0,46123 , 08,01,4637,157550 , 00,00,0038,0210
2020/12/29 , 0,0,0,831 , 0,0,0,46123 , 09,02,4722,157828 , 01,01,0085,0278
2020/12/30 , 0,0,0,915 , 0,0,?,47112 , 09,02,4745,158072 , 00,00,0023,0248
2020/12/31 , 0,0,0,914 , 0,0,2,47316 , 09,02,4745,158072 , 00,00,0000,0000
2021/01/01 , ?,0,?,916 , 0,0,3,47364 , 12,06,5478,160174 , 03,04,0733,2102
2021/01/02 , ?,0,?,916 , 0,0,?,47375 , 12,09,5579,160683 , 00,03,0101,0509
2021/01/03 , ?,0,?,916 , 0,0,?,47375 , 12,10,5598,160953 , 00,01,0019,0270
2021/01/04 , ?,0,?,916 , 0,0,?,47405 , 20,19,7145,164105 , 08,09,0547,3152
2021/01/05 , ?,0,?,916 , 0,0,?.47405 , 20,19,7145,164105 , 00,00,0000,0000
2021/01/06 , ?,0,?,916 , 0,0,?,47405 ,       7145,19,0,0,57678,667,3171,675,0,0
2021/01/07 , ?,0,?,916 , 0,0,?,47996 , 32,29,9425,170346 , 12,10,2280,6241
2021/01/08 , ?,0,?,916 , 0,0,?,48034 , 32,29,9425,170346 , 00,00,0000,0000
2021/01/09 , ?,0,?,916 , 0,?,?,48038 , 32,29,9425,170346 , 00,00,0000,0000
2021/01/10 , ?,0,?,916 , 0,?,?,48063 , 32,29,9425,170346 , 00,00,0000,0000
2021/01/11 , ?,0,?,916 , 0,0,12,48451 ,   13620,36,0,0,64210,703,3386,703,0,0
2021/01/12 , 0,0,3,960,48602,179932  ,  13620,36,0,0,64210,703,3386,703,0,0
2021/01/13 , 0,0,3,960,49010,179932,24(cadde,Brazil,B.1.1.28 )
2021/01/14,960,49124,179932,24
2021/01/15 , 0,1,5,1042 , 49807 . 179932 , 24
2021/01/16 , 1042,50006,179932,24
2021/01/17 , 1042,50008,179932,24 ,
2021/01/18 , 1042,50326,179932,24
2021/01/19 , 0,1,8,1126 , 50886 , 179932 , 24
2021/01/20 , 1129,51594,179932,24
2021/01/21 , 1129 , 52058 , 179932 , 24
2021/01/22 , 1129 , 52636 , 179932 , 24
2021/01/23 , 1129 , 52969 . 179932 , 24
2021/01/24 , 1210 , 52969 , 179932 , 24
2021/01/25 , 1272 , 53630 , 179932 , 24
2021/01/26 , 1272 , 54758 , 179932 , 24   (PHE:214159)
2021/01/27 , 1272 , 56592 , 179932 , 24 ,
2021/01/28 , 1274 , 57355 , 179932 , 24
2021/01/29 , 1274 , 57693 , 179932 , 24
2021/01/30 , 1274 , 57706 , 179932 , 24
2021/01/31 , 1274 , 57806 , 179932 , 24
2021/02/01 , 1356 , 57806 , 179932 , 24
2021/02/02 , 1397 , 59644 , 224820 , 24  {format-change at cog-uk,}
2021/02/03 , 1397 , 60084 , 224820 , 24  , 42108,132,0,36,73752,876,3723,764,1,0
2021/02/04 , 1397 , 60084*, 224820 , 24
2021/02/05 , 1397 , 61835 , 229120 , 24
2021/02/06 , 1397 , 61835 , 229120 , 24
2021/02/09 , 1397 , 62467 , 242926 , 24   , { 60543,170,129,0,81227,656,4136,839,1,26 }
2021/02/10 , 1397 , 62827 , 242926*, 24 , 55405,156,0,36,76299,878,3780,772,1,0,10
2021/02/11 , 1397 , 63956 , 242926 , 24
2021/02/12 , 1397 , 65743 , 249523 , 24
2021/02/13 , 1397 , 65745 , 254045 , 24
2021/02/14 , 1397 , 66036 , 257782 , 24
2021/02/15 , 1397 , 66044 , 257782 , 24
2021/02/16 , 1397 ,
2021/02/17 , 1397 , 66781 , 267131 , 24    , 75194,205,30,36,78074,880,3817,778,1,0
2021/02/18 , 1397 , 66785 , 271789 , 24    , 79138,218,31,36,78354,888,3821,779,1,0
2021/02/19 , 1397 , 66785 , 271789 , 24
2021/02/20 , 1397 , 66785 , 271789 , 24
2021/02/21 , 1397 , 66785 , 271789 , 24
2021/02/22 , 1397 , 76163 , 271789 , 24    ,  big genbank update, all from USA
2021/02/22 , 1397 , 79179 , 271789 , 24    , 
2021/02/25 , 1397 , 80086 , 271789 , 24
2021/03/01 , 1397 , 84277 , 297806 , 24    , 101496,256,44,37,79650,885,3845,783,1,17
2021/03/06 , 1397 , 91705 , 313258 , 24    , 113272,282,48,38,80487,890,3866,789,1,34,1
2021/03/10 , 1397 , 98768 , 313652 , 24    ,  116531,278,47,37,80204,880,3856,787,1,43,1
2021/03/12 , 1397, 103388 , 322717 , 24   ,  124917,295,47,37,80336,880,3859,787,1,54,1
2021/03/17 , 1397, 107850 , 332354 , 24   ,  133622,308,47,38,80494,880,3864,788,1,77,2  ; B.1.525 to 77

2021/04/22 , 1397 , 242752 , 387173 , 24 ,  suddenly there are 242752 sequences at genbank !
--------------------------------------
first B.1.1.7 at genbank : MW422255,MW422256,MW423686
San Diego, USA , Italy
Italy,12mut., no deletions !
https://www.ncbi.nlm.nih.gov/nuccore/MW422255

-------------------------------------------
https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?VirusLineage_ss=Severe%20acute%20respiratory%20syndrome%20coronavirus%202,%20taxid:2697049&SeqType_s=Nucleotide
https://www.cogconsortium.uk/data/
https://civnb.info/sequences/

---------------------------------------------------
weekly % of B.1.1.7 in Denmark week 46 - 04 : redoubles every 8 days
0.3,0.0,0.2,0.2,0.4,0.8,2.1,2.3,4.0,7.5,12.8,19.1
Germany, week 4, B.1.1.7 = 5.8%
--------------------------------------------------------
ONS, Jan05

ttps://www.ons.gov.uk/peoplepopulationandcommunity/healthandsocialcare/conditionsanddiseases/adhocs/12722estimatesofcovid19casesto02januaryforenglandregionsofenglandandbycasescompatiblewiththenewvariant
--------------------------------------------------------------------------
2021/02/01  Cologne reports 9% B.1.1.7 and 5% B.1.351


Code: [Select]
2020/12/23 , 151499,03094,001,00,00,51701,628,3000,652,0,0
2020/12/30 , 158072,04745,002,00,00,55287,661,3122,663,0,0
2021/01/06 , 164104,07145,019,00,00,57678,667,3171,675,0,0
2021/01/11 , 179931,13620,036,00,00,64210,703,3386,703,0,0
2021/02/03 , 224820,42108,132,00,36,73752,876,3723,764,1,0
2021/02/10 , 242925,55405,156,00,36,76299,878,3780,772,1,0
2021/02/17 , 267131,75194,205,30,36,78074,880,3817,778,1,0
------------------------------------------------------------------------------------
          A        ,           B,    C,  D, E, F, G,  H,  I,  J,  ,  L,M

all,
A , B.1.1.7,SE-England
B , B.1.351,South Africa
C , A.23,Uganda
D , B.1.1.28,Brazil-Manaos
E , B.1.177,Spain-Aragon
F , B.1.1.70,Wales
G , B.1.258 , Ireland ?
H , B.1.221 , Belgium
I , B.1.375 , USA - S-drop-out
J , B.1.525 ,

57
actual epidemic charts / UK , London , Jan 2021 alpha , Jan 2022,omicron
« on: January 01, 2021, 01:03:14 am »
actual London-charts ;
http://magictour.free.fr/lo-0107.GIF
http://magictour.free.fr/ons-1231.PNG

London : see how omicron started in the inner City (12 boroughs), where it now already goes down.
While it started later in the 12 Northern suburbs, where it is still growing
http://magictour.free.fr/lo-1211c.GIF


deaths :  https://www.england.nhs.uk/statistics/statistical-work-areas/covid-19-daily-deaths/
weekly hospitalisations by region : 2020-12-31
https://www.england.nhs.uk/statistics/statistical-work-areas/covid-19-hospital-activity/
https://covid.joinzoe.com/data


https://www.ons.gov.uk/peoplepopulationandcommunity/healthandsocialcare/conditionsanddiseases/bulletins/coronaviruscovid19infectionsurveypilot/latest#regional-analysis


London :
https://data.london.gov.uk/dataset/coronavirus--covid-19--deaths
https://data.london.gov.uk/download/coronavirus--covid-19--cases/151e497c-a16e-414e-9e03-9e428f555ae9/phe_cases_london_boroughs.csv
http://sonorouschocolate.com/covid19/index.php?title=LondonIndicators


---------------Ireland-------------------------------------------------------
https://www.gov.ie/en/news/7e0924-latest-updates-on-covid-19-coronavirus/#the-latest-news-as-of-715pm-on-thursday-7-january
https://www.gov.ie/en/collection/4b505-slides-from-the-nphet-press-briefings/
Jan07 : http://magictour.free.fr/irel0107.pdf
https://www.hpsc.ie/a-z/respiratory/coronavirus/novelcoronavirus/casesinireland/epidemiologyofcovid-19inireland/COVID19%20Daily%20infographic.pdf
-----------------------------------------------------------------------------



https://coronavirus.data.gov.uk/details/cases
2020/12/31 , cases last 7d , cases per M , total deaths, deaths per M


Code: [Select]

  138, 603,  377, 1649,Aberdeen City
  102, 390,  346, 1325,Aberdeenshire
   30, 467,  237, 3686,Adur
  103,1054,  196, 2005,Allerdale
  171,1334,  422, 3293,Amber Valley
   65, 559,  110,  947,Angus
  130, 906,  339, 2362,Antrim and Newtownabbey
   76, 470,  204, 1261,Ards and North Down
   52, 606,   44,  512,Argyll and Bute
  139, 643,  586, 2710,Armagh City Banbridge and Craigavon
   75, 467,  561, 3490,Arun
  168,1313,  352, 2752,Ashfield
  198,1523, 1012, 7783,Ashford
  133, 654, 1056, 5196,Aylesbury Vale
  123,1336,  368, 3998,Babergh
  245,1151, 2229,10469,Barking and Dagenham
  409,1033, 3152, 7962,Barnet
  560,2268,  519, 2102,Barnsley
  114,1700,   68, 1014,Barrow-in-Furness
  290,1549, 1908,10192,Basildon
  149, 844,  487, 2758,Basingstoke and Deane
  163,1388,  260, 2214,Bassetlaw
   81, 419,  317, 1640,Bath and North East Somerset
  254,1466, 1067, 6157,Bedford
  294, 856,  691, 2011,Belfast
  271,1091, 2656,10697,Bexley
 1594,1396, 3929, 3441,Birmingham
  109,1074,  254, 2502,Blaby
  246,1643,  552, 3687,Blackburn with Darwen
  292,2094,  252, 1807,Blackpool
   97,1204,  170, 2110,Bolsover
  526,1829,  497, 1728,Bolton
  141,2009,  201, 2864,Boston
  270, 683,  984, 2489,Bournemouth Christchurch and Poole
   79, 645,  717, 5851,Bracknell Forest
  769,1425,  948, 1756,Bradford
  149, 976, 1316, 8624,Braintree
  111, 793,  371, 2651,Breckland
  442,1340, 2356, 7144,Brent
  131,1701, 1010,13113,Brentwood
  154, 529, 1023, 3517,Brighton and Hove
  259, 559,  887, 1914,Bristol City of
  100, 765,  426, 3257,Broadland
  300, 903, 2926, 8804,Bromley
  156,1562,  308, 3084,Bromsgrove
   94, 966, 1095,11256,Broxbourne
  156,1368,  211, 1850,Broxtowe
  393, 722, 2822, 5188,Buckinghamshire
  174,1957,  443, 4982,Burnley
  382,2000,  450, 2356,Bury
  211, 998,  372, 1759,Calderdale
   48, 385,  390, 3125,Cambridge
  372, 569, 1669, 2554,Cambridgeshire
  142, 526, 1398, 5177,Camden
  153,1518,  322, 3196,Cannock Chase
  227,1372,  900, 5442,Canterbury
  138,1270,  439, 4039,Carlisle
  154,1704, 1024,11330,Castle Point
  113, 780,  313, 2161,Causeway Coast and Glens
  315,1091, 1420, 4919,Central Bedfordshire
  163, 877,  385, 2072,Charnwood
  173, 970, 1587, 8896,Chelmsford
  135,1161,  178, 1530,Cheltenham
   87, 578,  692, 4598,Cherwell
  512,1333,  940, 2447,Cheshire East
  525,1530,  934, 2722,Cheshire West and Chester
   97, 925,  160, 1525,Chesterfield
   63, 520,  282, 2328,Chichester
   83, 864,  376, 3915,Chiltern
  171,1447,  270, 2284,Chorley
  358, 682,  750, 1429,City of Edinburgh
   46, 893,   41,  795,Clackmannanshire
  159, 817,  806, 4140,Colchester
    1,  37,    2,   75,Comhairle nan Eilean Siar
   82,1203,   62,  909,Copeland
   78,1080,  148, 2049,Corby
  189, 331,  724, 1266,Cornwall and Isles of Scilly
   95,1057,  191, 2125,Cotswold
  893,1685, 1378, 2600,County Durham
  300, 807,  951, 2560,Coventry
   64,1120,   81, 1418,Craven
   86, 765,  607, 5400,Crawley
  467,1208, 3206, 8290,Croydon
  644,1288, 1187, 2374,Cumbria
  134, 866,  736, 4756,Dacorum
  180,1685,  263, 2462,Darlington
  137,1217, 1046, 9289,Dartford
   91,1059,  251, 2920,Daventry
  363,1411,  681, 2647,Derby
   70, 968,  112, 1549,Derbyshire Dales
 1035,1289, 1657, 2064,Derbyshire
   94, 621,  492, 3252,Derry City and Strabane
  378, 471, 1120, 1396,Devon
  621,1991,  691, 2216,Doncaster
  181, 478,  523, 1382,Dorset
  206,1744,  641, 5426,Dover
  441,1371,  980, 3047,Dudley
   69, 464,  115,  773,Dumfries and Galloway
  155,1038,  280, 1875,Dundee City
  334, 977, 2327, 6808,Ealing
  119, 975,  236, 1934,East Ayrshire
   42, 467,  223, 2482,East Cambridgeshire
   96, 656,  224, 1531,East Devon
  133,1224,  142, 1307,East Dunbartonshire
   72, 589,  350, 2862,East Hampshire
  109, 728,  885, 5910,East Hertfordshire
  291,2053,  160, 1129,East Lindsey
   71, 663,  122, 1139,East Lothian
 5900,1220,12064,  240,East Midlands
  133,1407,  234, 2475,East Northamptonshire
 6237,1000,35072, 5624,East of England
  111,1162,  174, 1821,East Renfrewshire
  500,1466,  601, 1762,East Riding of Yorkshire
  250,2088,  422, 3524,East Staffordshire
  256,1026,  477, 1912,East Suffolk
  495, 888, 3146, 5646,East Sussex
   76, 733,  537, 5176,Eastbourne
   81, 606,  343, 2568,Eastleigh
   55,1033,  258, 4845,Eden
  119, 870,  817, 5972,Elmbridge
  295, 884, 3497,10477,Enfield
  207,1572, 1765,13403,Epping Forest
   91,1129,  539, 6685,Epsom and Ewell
  164,1422,  193, 1673,Erewash
 1789,1201,12766, 8572,Essex
   61, 464,  194, 1476,Exeter
  112, 696,  163, 1013,Falkirk
  106, 912,  353, 3037,Fareham
  105,1031,  204, 2003,Fenland
   48, 409,  322, 2743,Fermanagh and Omagh
  217, 581,  429, 1148,Fife
  249,2204,  704, 6230,Folkestone and Hythe
   63, 726,  206, 2374,Forest of Dean
  184,2278,  123, 1523,Fylde
  315,1559,  539, 2668,Gateshead
  156,1323,  297, 2519,Gedling
  754,1191, 1084, 1712,Glasgow City
  135,1045,  390, 3020,Gloucester
  630, 989, 1403, 2202,Gloucestershire
   77, 908,  190, 2240,Gosport
  148,1384, 1008, 9426,Gravesham
   77, 775,  226, 2275,Great Yarmouth
  222, 771, 2200, 7640,Greenwich
   80, 537,  707, 4745,Guildford
  218, 750, 2245, 7719,Hackney and City of London
  164,1267,  271, 2094,Halton
   76, 830,  271, 2959,Hambleton
  136, 735, 1100, 5941,Hammersmith and Fulham
 1076, 778, 4355, 3150,Hampshire
   83, 885,  235, 2505,Harborough
  205, 763, 2305, 8580,Haringey
  100,1149,  885,10165,Harlow
  134, 833,  207, 1287,Harrogate
  339,1350, 2000, 7963,Harrow
   45, 464,  348, 3585,Hart
  164,1751,  395, 4217,Hartlepool
   58, 626,  884, 9540,Hastings
  142,1125,  621, 4920,Havant
  491,1892, 2947,11354,Havering
  140, 726,  349, 1810,Herefordshire County of
 1166, 980, 7833, 6585,Hertfordshire
  173,1649,  969, 9236,Hertsmere
  139,1500,  130, 1403,High Peak
   33, 140,  134,  568,Highland
  301, 981, 2510, 8179,Hillingdon
  121,1070,  219, 1936,Hinckley and Bosworth
  117, 814,  402, 2796,Horsham
  269, 991, 2121, 7811,Hounslow
  128, 719,  413, 2321,Huntingdonshire
  123,1518,  227, 2801,Hyndburn
   72, 925,  127, 1632,Inverclyde
  156,1139,  431, 3148,Ipswich
   91, 642,  336, 2370,Isle of Wight
  133, 549, 1527, 6298,Islington
  113, 724,  775, 4964,Kensington and Chelsea
 2120,1340,10512, 6647,Kent
  111,1091,  226, 2221,Kettering
  170,1123,  412, 2722,King's Lynn and West Norfolk
  398,1532,  613, 2360,Kingston upon Hull City of
  168, 946, 1100, 6197,Kingston upon Thames
  589,1339,  715, 1626,Kirklees
  237,1571,  283, 1876,Knowsley
  264, 810, 2361, 7242,Lambeth
 1940,1590, 3058, 2507,Lancashire
  153,1048,  339, 2321,Lancaster
  923,1164, 1524, 1921,Leeds
  429,1211, 1064, 3004,Leicester
  755,1069, 1627, 2304,Leicestershire
   97, 939,  437, 4232,Lewes
  270, 883, 2272, 7429,Lewisham
  175,1671,  294, 2807,Lichfield
  116,1168,  358, 3605,Lincoln
 1012,1329, 1950, 2562,Lincolnshire
   99, 678,  279, 1911,Lisburn and Castlereagh
  783,1572, 1032, 2072,Liverpool
 8410, 938,72325, 8070,London
  272,1277, 1119, 5252,Luton
  169, 984, 1252, 7286,Maidstone
   43, 662,  477, 7347,Maldon
   54, 686,  101, 1283,Malvern Hills
  709,1282, 1059, 1916,Manchester
  118,1079,  270, 2470,Mansfield
  442,1587, 2527, 9072,Medway
   65,1269,  129, 2519,Melton
   76, 658,  220, 1903,Mendip
  233,1128, 1733, 8390,Merton
  113, 811,  431, 3095,Mid and East Antrim
   38, 462,  122, 1482,Mid Devon
   96, 924,  199, 1915,Mid Suffolk
  151,1000,  593, 3927,Mid Sussex
  112, 754,  385, 2592,Mid Ulster
  214,1518,  317, 2249,Middlesbrough
  121,1309,  115, 1244,Midlothian
  216, 802, 2194, 8142,Milton Keynes
  106,1215,  386, 4424,Mole Valley
   14, 146,   53,  553,Moray
    1,  37,    2,   75,Na h-Eileanan Siar
  120, 666,  304, 1688,New Forest
  120, 980,  259, 2116,Newark and Sherwood
  318,1050,  425, 1403,Newcastle upon Tyne
  229,1769,  282, 2179,Newcastle-under-Lyme
  329, 932, 3471, 9829,Newham
   85, 469,  400, 2205,Newry Mourne and Down
  666, 734, 2536, 2794,Norfolk
  149,1106,  210, 1559,North Ayrshire
   54, 556,  129, 1328,North Devon
  156,1538,  194, 1912,North East Derbyshire
  207,1297,  161, 1009,North East Lincolnshire
 4067,1523, 5855, 2193,North East
   96, 719,  473, 3541,North Hertfordshire
  127,1086,  324, 2771,North Kesteven
  372,1090,  596, 1746,North Lanarkshire
  221,1283,  263, 1526,North Lincolnshire
   76, 725,  226, 2156,North Norfolk
  196, 911,  459, 2134,North Somerset
  238,1145,  352, 1693,North Tyneside
  108,1655,  127, 1946,North Warwickshire
  117,1129,  204, 1969,North West Leicestershire
11847,1614,16462, 2242,North West
  589, 953, 1184, 1916,North Yorkshire
  327,1456,  913, 4065,Northampton
  898,1192, 2332, 3096,Northamptonshire
  426,1321,  662, 2053,Northumberland
   44, 313,  446, 3173,Norwich
  386,1160,  748, 2247,Nottingham
  996,1203, 1930, 2330,Nottinghamshire
  204,1571,  362, 2787,Nuneaton and Bedworth
   97,1701,  201, 3525,Oadby and Wigston
  454,1915,  412, 1738,Oldham
    2,  90,    1,   45,Orkney Islands
   68, 446,  520, 3411,Oxford
  385, 557, 2309, 3338,Oxfordshire
  160,1737,  371, 4028,Pendle
  102, 671,  188, 1237,Perth and Kinross
  171, 845,  792, 3916,Peterborough
  124, 473,  490, 1870,Plymouth
  142, 661,  950, 4421,Portsmouth
  226,1579,  294, 2054,Preston
  163,1008,  749, 4630,Reading
  407,1333, 3444,11284,Redbridge
  188,1371,  175, 1276,Redcar and Cleveland
  109,1278,  186, 2182,Redditch
  195,1311,  855, 5748,Reigate and Banstead
  211,1178,  339, 1893,Renfrewshire
   84,1380,  200, 3285,Ribble Valley
  146, 737, 1233, 6227,Richmond upon Thames
   56,1042,  119, 2215,Richmondshire
  483,2172,  474, 2131,Rochdale
  121,1385,  855, 9786,Rochford
   90,1259,  158, 2210,Rossendale
  137,1426,  609, 6338,Rother
  555,2091,  529, 1993,Rotherham
   83, 762,  329, 3020,Rugby
   74, 828,  409, 4574,Runnymede
  115, 965,  281, 2358,Rushcliffe
   79, 835,  700, 7400,Rushmoor
   26, 651,   75, 1878,Rutland
   45, 813,  101, 1824,Ryedale
  459,1773,  507, 1959,Salford
  587,1787, 1221, 3717,Sandwell
  150,1379,  236, 2170,Scarborough
   60, 519,  150, 1299,Scottish Borders
   80, 649,  390, 3166,Sedgemoor
  472,1708,  526, 1903,Sefton
   64, 706,  169, 1865,Selby
  111, 919,  813, 6733,Sevenoaks
  785,1342, 1018, 1741,Sheffield
    6, 262,   18,  785,Shetland Islands
  307, 950,  364, 1126,Shropshire
  135, 903, 1077, 7202,Slough
  332,1534,  592, 2736,Solihull
   60, 387,  396, 2553,Somerset West and Taunton
  306, 544, 1307, 2325,Somerset
  144,1279,  116, 1030,South Ayrshire
   65, 923,  529, 7510,South Bucks
   49, 308,  439, 2760,South Cambridgeshire
  141,1315,  276, 2573,South Derbyshire
 8131, 886,45205, 4924,South East
  228, 800,  526, 1845,South Gloucestershire
   19, 218,   93, 1069,South Hams
  112,1179,  181, 1905,South Holland
  123, 864,  453, 3181,South Kesteven
  152,1446,  164, 1561,South Lakeland
  410,1279,  552, 1722,South Lanarkshire
   88, 625,  429, 3045,South Norfolk
   76, 804,  343, 3630,South Northamptonshire
   89, 627,  466, 3280,South Oxfordshire
  133,1200,  188, 1697,South Ribble
   90, 535,  301, 1788,South Somerset
  141,1254,  347, 3086,South Staffordshire
  297,1967,  344, 2279,South Tyneside
 3392, 603,10248, 1822,South West
  148, 586,  875, 3465,Southampton
  252,1376, 1756, 9589,Southend-on-Sea
  184, 577, 2308, 7239,Southwark
   96, 961,  674, 6751,Spelthorne
  159,1071,  870, 5860,St Albans
  236,1307,  352, 1949,St. Helens
  218,1588,  362, 2637,Stafford
  179,1818,  216, 2194,Staffordshire Moorlands
 1459,1659, 2398, 2726,Staffordshire
   65, 740,  496, 5646,Stevenage
   64, 679,   80,  849,Stirling
  420,1431,  670, 2283,Stockport
  299,1515,  421, 2133,Stockton-on-Tees
  454,1771,  618, 2411,Stoke-on-Trent
  172,1322,  244, 1876,Stratford-on-Avon
  118, 984,  251, 2092,Stroud
  730, 959, 1916, 2517,Suffolk
  535,1927,  584, 2103,Sunderland
   70, 784,  469, 5252,Surrey Heath
 1125, 940, 6465, 5404,Surrey
  207,1003, 1675, 8117,Sutton
  250,1666, 1067, 7109,Swale
  137, 617,  617, 2777,Swindon
  511,2256,  405, 1788,Tameside
  114,1486,  153, 1995,Tamworth
   92,1044,  598, 6786,Tandridge
   49, 365,  173, 1289,Teignbridge
  130, 723,  262, 1457,Telford and Wrekin
  203,1385,  582, 3971,Tendring
  100, 793,  318, 2521,Test Valley
   84, 884,  187, 1968,Tewkesbury
  240,1691,  706, 4975,Thanet
  109,1168,  784, 8401,Three Rivers
  250,1434, 2198,12607,Thurrock
   83, 628,  828, 6265,Tonbridge and Malling
   97, 712,   85,  624,Torbay
   39, 571,   70, 1025,Torridge
  195, 600, 3138, 9663,Tower Hamlets
  324,1365,  598, 2519,Trafford
  102, 859,  535, 4506,Tunbridge Wells
   59, 646,  551, 6036,Uttlesford
   68, 500,  371, 2728,Vale of White Horse
  525,1507,  633, 1817,Wakefield
  482,1688,  899, 3149,Walsall
  278,1004, 2494, 9004,Waltham Forest
  235, 713, 2313, 7016,Wandsworth
  310,1476,  583, 2776,Warrington
  114, 793,  327, 2275,Warwick
  681,1178, 1389, 2403,Warwickshire
  131,1356,  845, 8749,Watford
  111, 879,  471, 3728,Waverley
  127, 786,  679, 4205,Wealden
   82,1029,  217, 2722,Wellingborough
   96, 780,  680, 5527,Welwyn Hatfield
  106, 669,  532, 3358,West Berkshire
   22, 394,  115, 2061,West Devon
  112,1259,  112, 1259,West Dunbartonshire
  192,1680,  251, 2196,West Lancashire
  102,1066,  273, 2854,West Lindsey
  194,1060,  155,  847,West Lothian
 7960,1341,16394, 2763,West Midlands
   73, 660,  260, 2350,West Oxfordshire
   99, 553,  441, 2463,West Suffolk
  589, 682, 3015, 3490,West Sussex
  162, 620, 1306, 4998,Westminster
  747,2273,  659, 2005,Wigan
  316, 632,  806, 1612,Wiltshire
  105, 841,  341, 2731,Winchester
  128, 845,  843, 5567,Windsor and Maidenhead
  471,1454,  761, 2349,Wirral
   91, 903,  540, 5358,Woking
  144, 842,  758, 4430,Wokingham
  386,1466, 1153, 4378,Wolverhampton
   73, 721,  191, 1887,Worcester
  667,1120, 1289, 2164,Worcestershire
   67, 606,  333, 3012,Worthing
  128, 989,  287, 2217,Wychavon
  112, 643,  861, 4941,Wycombe
  147,1451,  216, 2132,Wyre Forest
  250,2230,  194, 1731,Wyre
  154, 731,  562, 2668,York
 7607,1382,10333, 1878,Yorkshire and The Humber



2021-12-28 : http://magictour.free.fr/lon11228.GIF

58
expert opinions / Re: Jan 2020
« on: December 31, 2020, 08:53:03 am »
At the the time, Prof John Oxford told @BBCRadio4
 "I'm not worried at all. I really am not. It's very small numbers we're dealing with here.
I'd be more worried about measles..." (on 23 Jan 2020)
----------------------------------------------------------

59
genetics / Re: genbank 2020-04-11
« on: December 28, 2020, 12:13:05 am »
2020-12-09 , "sars2-21" , 44708 sequences

countries :

Code: [Select]
518862 ,13303 ,  25 ,Australia
  71659 ,23785 , 331 ,USA
  68834 ,  119 ,   1 ,Bahrain
  22619 ,   10 ,   0 ,Malta
  21801 ,   29 ,   1 ,Timor-Leste
  13072 ,  114 ,   8 ,Serbia
  12756 ,   96 ,   7 ,Hong Kong
   9975 ,    4 ,   0 ,Belize
   9424 ,   98 ,  10 ,Greece
   3780 ,  143 ,  37 ,Poland
   3248 ,  227 ,  69 ,Thailand
   2899 ,  245 ,  84 ,Iran
   2832 ,   94 ,  33 ,Peru
   2696 ,    8 ,   2 ,Jamaica
   2694 ,   32 ,  11 ,Tunisia
   2633 ,   27 ,  10 ,Jordan
   2324 ,  240 , 103 ,Egypt
   2222 ,    5 ,   2 ,Gabon
   2145 ,   23 ,  10 ,Czechia
   2068 ,   12 ,   5 ,Denmark
   2007 ,    8 ,   3 ,Georgia
   1919 ,   78 ,  40 ,Iraq
   1653 ,   58 ,  35 ,Saudi Arabia
   1649 ,  273 , 165 ,Bangladesh
   1506 ,   91 ,  60 ,Italy
   1466 ,   46 ,  31 ,Ghana
   1366 ,   11 ,   8 ,Sierra Leone
   1362 ,   89 ,  65 ,France
   1342 ,   32 ,  23 ,Taiwan
   1096 ,   92 ,  83 ,Germany
   1090 ,   51 ,  46 ,Spain
   1087 ,   10 ,   9 ,Israel
    932 ,   16 ,  17 ,Netherlands
    918 ,  116 , 126 ,Japan
    755 ,   64 ,  84 ,Turkey
    704 ,   20 ,  28 ,Venezuela
    587 ,    4 ,   6 ,Lebanon
    573 ,   11 ,  19 ,Chile
    571 ,   74 , 129 ,Mexico
    553 ,   10 ,  18 ,Guatemala
    504 ,  700 ,1386 ,India
    474 ,   18 ,  37 ,Canada
    287 ,    1 ,   3 ,Uruguay
    276 ,    9 ,  32 ,Malaysia
    269 ,   10 ,  37 ,Morocco
    258 ,    3 ,  11 ,Belgium
    253 ,   28 , 110 ,Philippines
    239 ,   35 , 145 ,Russia
    225 ,    4 ,  17 ,Ecuador
    211 ,    4 ,  18 ,Kazakhstan
    199 ,    1 ,   5 ,New Zealand
    197 ,    2 ,  10 ,Sweden
    194 ,   10 ,  51 ,S. Korea
    186 ,    4 ,  21 ,Sri Lanka
    180 ,    1 ,   5 ,Finland
    176 ,    2 ,  11 ,Cuba
    143 ,  207 ,1439 ,China
     93 ,   20 , 213 ,Brazil
     73 ,    5 ,  68 ,UK
     71 ,    7 ,  97 ,Vietnam
     59 ,    2 ,  33 ,Uzbekistan
     59 ,    1 ,  16 ,Cambodia
     53 ,   12 , 222 ,Pakistan
     53 ,    1 ,  18 ,Zambia
     52 ,    1 ,  19 ,Romania
     39 ,    2 ,  51 ,Colombia
     36 ,    2 ,  54 ,Kenya
     34 ,    1 ,  29 ,Nepal
     19 ,    4 , 208 ,Nigeria
     16 ,    1 ,  59 ,South Africa

-------------------------------------
SARS2-sequences at genbank on 2020/12/09 per billion population
SARS2-sequences at genbank on 2020/12/09
population in million


 1.701412E+38 , 3  0 ,Guam
 1.701412E+38 , 2  0 ,West Bank
 1.701412E+38 , 14  0 ,Puerto Rico



mutations :

Code: [Select]
  36235,A23403G
  36105,C3037T
  35945,C14408T
  34533,C241T
  15954,G28881A
  15931,G28883C
  15929,G28882A
  14983,G25563T
  12027,C1059T
  11227,A1163T
  10960,C18555T
  10845,G23401A
  10834,G16647T
  10810,T7540C
   9845,G22992A
   3493,C27964T
   2913,T28144C
   2867,C8782T
   2030,A20268G
   1961,C18060T
   1939,C28854T
   1929,A17858G
   1888,C17747T
   1696,C18877T
   1670,C10319T
   1415,G11083T
   1382,C22480T
   1309,C14805T
   1260,T19839C
   1037,A18424G
   1027,G25907T
   1014,C28472T
    983,C21304T
    982,C2416T
    957,C28869T
    933,C29870A
    873,C29784T
    850,T833C
    833,G15594T
    829,C11916T
    747,C15933T
    743,C27059T
    717,A17337G
    667,G16968T
    663,C18568T
    649,G3114T
    635,C26735T
    626,C16260T
    615,C28821A
    602,C15324T
    584,G8083A
    561,C17850T
    533,G29553A
    524,C920T
    524,C5144T
    522,C66T
    515,A29700G
    495,C24034T
    491,C3177T
    488,G28077C
    476,T18736C
    474,T490A
    474,C313T
    467,T26729C
    451,T27785C
    449,G3871T
    444,T3931C
    440,C28887T
    433,A696C
    424,G26144T
    423,C21575T
    423,A22320G
    418,T24076C
    417,C28977T
    406,C36T
    405,C23707T
    396,C18998T
    392,G29540A
    376,C28087T
    368,C379A
    368,C28311T
    364,G21255C
    362,A26162G
    338,C22444T
    331,G29402T
    315,G1738T
    311,C22227T
    308,C28657T
    306,C5672T
    300,C6541T
    296,C4226T
    280,C6286T
    280,A24694T
    279,A7837C
    275,G29645T
    270,C6040T
    270,C28932T
    270,A35T
    268,C26801G
    262,C7086T
    260,T445C
    260,C2836T
    259,C6033T
    256,G3242A
    255,G26233T
    254,C1385T
    253,A14084G
    248,C28961T
    246,T9477A
    245,G29692T
    244,C3773T
    244,C28863T
    244,C26256T
    242,G25979T
    242,C4540T
    240,C23457A
    240,A24253T
    238,T14191C
    238,C16092T
    237,G26526T
    236,C29668T
    232,G23900C
    230,C25710T
    224,C23655T
    223,C29546T
    220,G29808T
    219,G21724T
    218,C8389T
    215,G26690T
    214,G19677T
    211,G3564T
    206,C7162T
    198,A10323G
    197,G29868A
    197,G14241T
    197,A34T
    194,T22162C
    194,C18486T
    193,G29711T
    193,C13730T
    192,G24933T
    189,C23929T
    187,G7798T
    187,C29870M
    184,C3738T
    184,C13536T
    180,C11109T
    180,C10188T
    179,C28868T
    177,C15352T
    173,G12478A
    172,G22225T
    172,C4543T
    172,C19524T
    170,G8371T
    170,G16813A
    170,C20759T
    169,T17247C
    168,T24982C
    167,C23731T
    166,G28487A
    166,C7600T
    166,C28896G
    164,G28842T
    164,C4002T
    162,C11497T
    159,C14768T
    158,G15766T
    158,G13993T
    157,G9526T
    157,G17019T
    157,C16887T
    156,C6312A
    156,C27603T
    156,C18744T
    155,T26876C
    155,G9130T
    155,C16616T
    155,A29871G
    154,T27957C
    154,G28975C
    154,A16889G
    153,G29399A
    153,G10265A
    153,C27635T
    152,T23548C
    152,G29742T
    152,C15654T
    151,C9996T
    150,C5184T
    150,C26885T
    150,C17639T
    150,C11379Y
    148,T21925C
    148,C21516T
    148,C1917T
    146,C29769T
    144,T17091C
    144,G29777T
    144,G26257T
    144,G19684T
    144,G15907A
    144,C14362T
    142,T8041C
    142,C28253T
    142,C12025T
    141,C2558T
    141,C16111T
    140,T27384C
    140,C19217T
    140,C11575T
    140,A6512C
    139,G26062T
    139,C29614T
    137,G1397A
    137,C1288T
    136,T27319C
    136,C12116T
    136,A27024C
    136,A21137G
    135,G29734C
    135,C23191T
    134,C19718T
    133,G5629K
    133,G29706T
    133,A2480G
    133,A12199G
    132,C222T
    131,C19170T
    130,T28688C
    130,C28256T
    130,C16762T
    127,T29867A
    126,G28878A
    126,C25916T
    126,C10376T
    123,T10717C
    123,C9430T
    123,C37A
    123,C25572T
    123,C16376T
    122,C15540T
    120,G29742A
    120,G105T
    120,C19488T
    120,A15972G
    118,G11417T
    118,C29353T
    118,C24351T
    117,C16289T
    116,T25111A
    116,G17721T
    116,C11956T
    116,A4624G
    115,C6285T
    115,C23185T
    114,G21468T
    113,G25429T
    113,G16912T
    113,C2488T
    113,A26759T
    112,T15276A
    111,G28373T
    110,G20580T
    110,C11379T
    109,G4300T
    109,G10097A
    108,G23593T
    108,G18985T
    108,C6445T
    108,C12763T
    107,C12880T
    106,C5365T
    106,C28849T
    105,C29366Y
    105,C22987T
    105,C15720T
    104,C3411T
    104,C24904T
    104,A2161G
    103,T15354C
    103,C29095T
    103,C25350T
    103,C24378T
    102,T25902W
    102,C4832T
    101,T25908W
    101,T1927C
    101,G28727T
    101,G24992C
    101,G1401A
    101,C4113T
    100,T29867W
    100,C6651T


60
genetics / Re: Coronaviruses
« on: December 27, 2020, 12:52:33 am »

human non-sars-like Coronaviruses at genbank , release 239.0 :

   1394, Human coronavirus OC43
    907, Human coronavirus NL63
    424, Human coronavirus 229E
    415, Human coronavirus HKU1
    195, unidentified human coronavirus
      6, Human enteric coronavirus 4408
      4, Human coronavirus Feline-like Hu142
      2, Human betacoronavirus 2c Jordan-N3/2012
      2, Human betacoronavirus 2c EMC/2012
      1, Human group 1 coronavirus associated with pneumonia
      1, Human enteric coronavirus strain 4408
      1, Human coronavirus type 5
      1, Human coronavirus NO/2708/04
      1, Human coronavirus NO/1917/04
      1, Human coronavirus NO/1055/04
      1, Human coronavirus NO/0867/04
      1, Human coronavirus NO/0848/04
      1, Human coronavirus NO/0835/04
      1, Human coronavirus NO/0749/04
      1, Human coronavirus NO/0733/05
      1, Human coronavirus NO/0643/05
      1, Human coronavirus NO/0398/05
      1, Human coronavirus NO/0341/04
      1, Human coronavirus NO/0193/05
      1, Human coronavirus NO/0053/04
      1, Human coronavirus NO/0023/05
      1, Human coronavirus NO/0003/05
      1, Human coronavirus 3363/2000/NL
      1, Human coronavirus 1196/2001/NL
      1, Human betacoronavirus 2c England-Qatar/2012



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