D00614G,135340,143930,8590
A00222V, 56710, 60647,3937
N00501Y, 6060, 9928,3868
P00681H, 5659, 9517,3858
T00716I, 5624, 9471,3847
D01118H, 5576, 9422,3846
S00982A, 5568, 9413,3845
A00570D, 5569, 9413,3844
L00018F, 31126, 33762,2636
A00262S, 2873, 3053, 180
E00583D, 1929, 2091, 162
N00439K, 3669, 3794, 125
L00005F, 2270, 2394, 124
P00272L, 1896, 2008, 112
S00477N, 2928, 3034, 106
D00080Y, 1134, 1227, 93
Q00023H, 591, 660, 69
G00181V, 248, 317, 69
N00164T, 648, 708, 60
S00256L, 743, 800, 57
A00706V, 141, 196, 55
S00098F, 809, 859, 50
D00215H, 883, 930, 47
A01020S, 227, 269, 42
Q00613H, 210, 252, 42
S00494P, 101, 143, 42
L00176F, 886, 924, 38
D01163Y, 1730, 1766, 36
P01069S, 173, 209, 36
G01167V, 1704, 1738, 34
A00688V, 833, 863, 30
A00701V, 81, 111, 30
S00939F, 246, 274, 28
H00655Y, 1078, 1104, 26
Q00675H, 215, 240, 25
N00185S, 101, 126, 25
P00026S, 307, 331, 24
S00254F, 124, 147, 23
D00138Y, 76, 98, 22
H00049Y, 93, 114, 21
E00484K, 23, 44, 21
Q00677H, 198, 218, 20
D00080A, 24, 44, 20
P00681R, 21, 41, 20
A00831V, 18, 38, 20
K00417N, 13, 33, 20
-------------------------------
spike amino-acid mutations at cog-uk
A:mutation
B:occurrances Jan03
C:occurrances Jan07
D:occurrances between Jan03 and Jan07
B.1.351 9, 29, 20
B.1.1.7 5579, 9432,3853
B.1.177 42296,46609,4313
B.1.1.7 5579, 9432,3853
B.1.177.7 2313, 2768, 455
B.1.177.4 3488, 3795, 307
B.1 5562, 5833, 271
B.1.1.37 4374, 4590, 216
B.1.177.15 1226, 1422, 196
B.1.1.315 4081, 4257, 176
B.39 183, 343, 160
B.1.1 11496,11650, 154
B.1.177.16 898, 1032, 134
B.1.160 1924, 2048, 124
B.1.1.311 2469, 2584, 115
B.1.36.17 1915, 2010, 95
B.1.36 652, 744, 92
B.1.177.6 604, 695, 91
B.1.177.9 647, 732, 85
B.1.160.7 596, 681, 85
B.1.177.18 459, 544, 85
B.1.1.1 5470, 5553, 83
B.1.1.307 2015, 2098, 83
B.1.177.5 479, 545, 66
B.1.1.301 700, 763, 63
B.1.1.71 23, 86, 63
B.1.258.7 418, 477, 59
B.1.177.10 348, 405, 57
B.1.160.1 96, 152, 56
B.1.1.70 666, 721, 55
B.1.258.11 2, 57, 55
B.1.1.279 1041, 1095, 54
B.1.177.20 453, 507, 54
B.1.1.300 36, 90, 54
B.1.177.17 827, 878, 51
B.1.221 667, 712, 45
B.1.177.22 76, 120, 44
B.1.258.10 41, 85, 44
B.1.160.6 129, 169, 40
B.1.36.6 99, 136, 37
B.1.1.125 60, 96, 36
B.1.177.8 870, 903, 33
B.1.247 118, 151, 33
B.1.258 1787, 1819, 32
B.1.258.3 406, 437, 31
B.1.222 170, 200, 30
B.1.1.130 78, 108, 30
B.1.177.19 445, 474, 29
B.1.1.10 469, 497, 28
B.1.1.49 33, 61, 28
B.1.1.238 0, 28, 28
B.1.254 26, 52, 26
A 66, 91, 25
B.1.177.2 182, 204, 22
B.1.1.286 323, 344, 21
B.1.1.196 153, 173, 20
B.1.104 96, 116, 20
B.1.351 9, 29, 20
B.1.1.240 176, 194, 18
B.1.177.26 129, 147, 18
B.1.246 21, 39, 18
B.1.1.282 11, 29, 18
B.1.1.5 6, 24, 18
B.1.1.101 0, 16, 16
B.1.235 859, 874, 15
B.1.1.105 4, 19, 15
B.1.1.236 90, 104, 14
B.1.177.11 564, 577, 13
B.1.141 59, 72, 13
B.26 29, 42, 13
B.1.1.197 7, 20, 13
B.1.1.303 350, 362, 12
B.48 147, 159, 12
B.1.258.4 205, 216, 11
B.1.36.9 203, 214, 11
B.1.1.204 68, 79, 11
B.54 65, 76, 11
B.52 59, 70, 11
B.47 5, 16, 11
B.1.362 204, 214, 10
B.1.1.234 47, 57, 10
B.32 25, 35, 10
B.1.36.1 25, 35, 10
B.1.1.316 8, 18, 10
B.3 508, 517, 9
B.18 11, 20, 9
B.1.1.304 139, 147, 8
B.1.1.264 136, 144, 8
B.1.131 28, 36, 8
B.1.1.190 10, 18, 8
B.1.1.285 0, 8, 8
B.1.258.12 101, 108, 7
B.1.1.43 49, 56, 7
B.1.1.292 46, 53, 7
B.1.1.46 10, 17, 7
B.1.5.34 6, 13, 7
B.1.111 3, 10, 7
B.1.1.198 418, 424, 6
B.1.1.44 340, 346, 6
B.1.160.2 121, 127, 6
B.1.1.232 88, 94, 6
B.1.1.170 65, 71, 6
B.1.353 1, 7, 6
B.1.1.4 473, 478, 5
B.1.98 461, 466, 5
B.1.367 268, 273, 5
B.1.1.217 251, 256, 5
B.1.177.13 106, 111, 5
B.1.1.12 77, 82, 5
B.1.1.50 53, 58, 5
B.1.240 49, 54, 5
B.1.1.159 42, 47, 5
B.1.1.153 30, 35, 5
B.1.248 28, 33, 5
B.1.2 25, 30, 5
B.1.1.248 25, 30, 5
B.1.1.106 9, 14, 5
B.1.1.103 5, 10, 5
B.1.35 217, 221, 4
B.1.160.4 179, 183, 4
B.1.146 159, 163, 4
B.10 118, 122, 4
B.1.1.189 76, 80, 4
B.1.1.274 69, 73, 4
B.1.201 64, 68, 4
B.1.36.16 62, 66, 4
B.1.258.6 46, 50, 4
B.1.229 29, 33, 4
B.1.1.20 11, 15, 4
B.1.36.3 0, 4, 4
B.1.1.126 0, 4, 4
B.1.1.255 294, 297, 3
B.1.1.3 103, 106, 3
B.1.236 74, 77, 3
B.1.1.39 65, 68, 3
B.1.1.54 24, 27, 3
B.1.11 19, 22, 3
B.1.5.33 18, 21, 3
B.1.1.114 3, 6, 3
C.14 1, 4, 3
B.1.102 0, 3, 3
B.1.1.62 0, 3, 3
B.1.1.239 0, 3, 3
B.1.1.89 146, 148, 2
B.31 132, 134, 2
B.1.36.12 100, 102, 2
B.1.1.294 96, 98, 2
B.1.1.299 73, 75, 2
B.1.1.15 69, 71, 2
B.1.3 26, 28, 2
B.1.1.86 26, 28, 2
B.1.1.288 23, 25, 2
B.1.1.163 22, 24, 2
B.1.77 21, 23, 2
B.1.275 20, 22, 2
B.1.1.133 17, 19, 2
B.1.1.131 16, 18, 2
B.6 11, 13, 2
B.1.1.162 4, 6, 2
B.1.1.182 3, 5, 2
B.1.213 2, 4, 2
B.1.334 0, 2, 2
B.1.260 0, 2, 2
B.1.5 2890, 2678,-212
B.40 2168, 1987,-181
B.1.1.291 145, 1,-144
B.1.255 162, 50,-112
B 1743, 1678, -65
B.1.1.206 45, 1, -44
B.1.1.257 218, 179, -39
B.1.223 231, 198, -33
B.1.1.25 41, 15, -26
B.1.1.207 33, 9, -24
B.1.1.47 29, 9, -20
B.1.1.151 256, 238, -18
B.1.88 138, 121, -17
B.1.1.195 59, 42, -17
B.1.1.253 371, 355, -16
B.23 112, 98, -14
B.1.1.53 15, 1, -14
B.1.1.216 52, 40, -12
B.1.1.273 27, 15, -12
B.1.177.14 14, 2, -12
B.1.1.152 13, 1, -12
A.1 31, 20, -11
B.1.1.64 129, 119, -10
B.1.178 18, 8, -10
B.1.182 10, 1, -9
B.1.1.31 11, 2, -9
B.1.1.80 18, 10, -8
B.1.1.237 352, 345, -7
H.1 14, 7, -7
B.1.1.104 31, 25, -6
B.1.1.164 161, 156, -5
B.1.1.245 299, 295, -4
B.1.215 95, 91, -4
B.1.75 90, 86, -4
B.1.1.165 69, 65, -4
B.1.1.127 33, 29, -4
B.1.1.243 26, 22, -4
B.1.3.1 20, 16, -4
B.1.1.161 9, 5, -4
B.29 159, 156, -3
B.1.1.29 140, 137, -3
B.1.258.5 105, 102, -3
B.1.1.193 65, 62, -3
B.1.173 29, 26, -3
B.1.5.12 22, 19, -3
B.1.186 7, 4, -3
B.1.212 5, 2, -3
B.3.1 555, 553, -2
B.1.1.38 223, 221, -2
B.1.252 133, 131, -2
B.34 73, 71, -2
B.1.1.95 30, 28, -2
B.4 26, 24, -2
B.1.1.261 13, 11, -2
B.1.36.13 10, 8, -2
B.1.277 9, 7, -2
B.1.358 4, 2, -2
B.1.1.297 4, 2, -2
B.1.1.296 232, 231, -1
B.1.1.59 156, 155, -1
B.1.1.250 88, 87, -1
B.1.1.313 71, 70, -1
B.1.1.123 63, 62, -1
B.1.81 33, 32, -1
B.1.1.166 23, 22, -1
B.1.1.260 20, 19, -1
B.1.1.187 20, 19, -1
B.1.1.266 17, 16, -1
B.1.108 16, 15, -1
B.1.177.21 12, 11, -1
B.1.1.281 6, 5, -1
B.1.177.25 4, 3, -1
B.1.1.211 4, 3, -1
C.13 3, 2, -1
B.1.190 3, 2, -1
B.1.324 2, 1, -1
B.1.1.99 2, 1, -1
B.1.1.84 2, 1, -1
B.1.1.135 2, 1, -1
strain
occurrance Jan03
occurrance Jan07
occurrance between Jan03 and Jan07
(report date ... ahh, this is useless since we have the sampling dates]
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